miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 13436 0.69 0.502147
Target:  5'- gGGGCCUGCGCuggcuguaucuagcgGGCGcGCaCCUGCUc -3'
miRNA:   3'- aUUUGGACGCG---------------CCGCaCGcGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 13927 0.69 0.508042
Target:  5'- gAGGCCcGCGaCGGCGUcauGCGCgaGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGCA---CGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 14322 0.66 0.659435
Target:  5'- gGGGCCUcaucgaGCGGCGggcagagaagggGUGCCUGCUg -3'
miRNA:   3'- aUUUGGAcg----CGCCGCa-----------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 14336 0.78 0.146952
Target:  5'- gGGGCCggGCGUGGUGgcgGCGCCUGCg- -3'
miRNA:   3'- aUUUGGa-CGCGCCGCa--CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 14814 0.67 0.620008
Target:  5'- cGGAgCUGCGCGGCGcccUGCGCgCgGUg- -3'
miRNA:   3'- aUUUgGACGCGCCGC---ACGCG-GaCGaa -5'
6361 5' -59.2 NC_001847.1 + 16039 0.68 0.5684
Target:  5'- --uGCCUGCcccgccgccccGCGGCGgccgcgGCGCCUcuGCUg -3'
miRNA:   3'- auuUGGACG-----------CGCCGCa-----CGCGGA--CGAa -5'
6361 5' -59.2 NC_001847.1 + 18406 0.67 0.630389
Target:  5'- gAAGCaCaGCGCGGCGUGCaggGCCUugGCc- -3'
miRNA:   3'- aUUUG-GaCGCGCCGCACG---CGGA--CGaa -5'
6361 5' -59.2 NC_001847.1 + 18689 0.71 0.405504
Target:  5'- aGAACC-GCGcCGcGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGC-GC-CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 18971 0.69 0.498234
Target:  5'- -cGACCaGCGCGGCcgcgGCGCCcGCg- -3'
miRNA:   3'- auUUGGaCGCGCCGca--CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 20077 0.72 0.347414
Target:  5'- --uGCCUGCGCucggGGCGaGCGCCaGCUg -3'
miRNA:   3'- auuUGGACGCG----CCGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 20192 0.66 0.692402
Target:  5'- gUAGACC-GCGgGGCG-GCGCCccGCc- -3'
miRNA:   3'- -AUUUGGaCGCgCCGCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 20990 0.68 0.562268
Target:  5'- cUAGGCCUcccaaucggcaccgcGCGCGGCuGUGCGggcgacCCUGCg- -3'
miRNA:   3'- -AUUUGGA---------------CGCGCCG-CACGC------GGACGaa -5'
6361 5' -59.2 NC_001847.1 + 22087 0.66 0.692402
Target:  5'- cAGACgUGCGCcgacGCGcUGCGgCUGCUg -3'
miRNA:   3'- aUUUGgACGCGc---CGC-ACGCgGACGAa -5'
6361 5' -59.2 NC_001847.1 + 22161 0.68 0.527896
Target:  5'- aAAGCCgGCGCaGCGgGCcgGCCUGCUc -3'
miRNA:   3'- aUUUGGaCGCGcCGCaCG--CGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 27784 0.66 0.661505
Target:  5'- aUAAA-CUGCGCGGCGgGUGCggGCUc -3'
miRNA:   3'- -AUUUgGACGCGCCGCaCGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 27942 0.67 0.588954
Target:  5'- cAGGCCUGggcCGCGGCGcGCGCgCUcGCg- -3'
miRNA:   3'- aUUUGGAC---GCGCCGCaCGCG-GA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 27995 0.73 0.301841
Target:  5'- cUGGGCCgcgcugcagcGCGCGGCGUgccgcgcuuacgaGCGCCUGCa- -3'
miRNA:   3'- -AUUUGGa---------CGCGCCGCA-------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 28069 0.68 0.54803
Target:  5'- aAAACCUGCcCGGUcuggugcuGUgGCGCCUGCc- -3'
miRNA:   3'- aUUUGGACGcGCCG--------CA-CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 28185 0.71 0.396838
Target:  5'- --uACCUG-GCGGcCGcGCGCCUGCg- -3'
miRNA:   3'- auuUGGACgCGCC-GCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 28762 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.