Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 5' | -59.2 | NC_001847.1 | + | 118449 | 0.67 | 0.630389 |
Target: 5'- ---uCCUGCugGUGGCGgccucGUGCCUGCg- -3' miRNA: 3'- auuuGGACG--CGCCGCa----CGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 118256 | 1.03 | 0.002368 |
Target: 5'- gUAAACCUGCGCGGCGUGCGCCUGCUUu -3' miRNA: 3'- -AUUUGGACGCGCCGCACGCGGACGAA- -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 115702 | 0.71 | 0.379867 |
Target: 5'- aGAGCCgGCuGCGGCccguGUGCGCUUGCc- -3' miRNA: 3'- aUUUGGaCG-CGCCG----CACGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 113512 | 0.66 | 0.682142 |
Target: 5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3' miRNA: 3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 113415 | 0.68 | 0.527896 |
Target: 5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3' miRNA: 3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 112531 | 0.66 | 0.692402 |
Target: 5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3' miRNA: 3'- auuuGGACGCGCCGcac-GCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 110808 | 0.71 | 0.405504 |
Target: 5'- aAGGCCgcGCGCGGCGUggcGCGCCaccGCUc -3' miRNA: 3'- aUUUGGa-CGCGCCGCA---CGCGGa--CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 106698 | 0.66 | 0.692402 |
Target: 5'- -cGGCCauagGCacuuuccaguugGCGGCGUGCGCCaggGCg- -3' miRNA: 3'- auUUGGa---CG------------CGCCGCACGCGGa--CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 106622 | 0.67 | 0.609637 |
Target: 5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3' miRNA: 3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 106119 | 0.71 | 0.396838 |
Target: 5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3' miRNA: 3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 105966 | 0.67 | 0.609637 |
Target: 5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3' miRNA: 3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 105564 | 0.74 | 0.249862 |
Target: 5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3' miRNA: 3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 105327 | 0.66 | 0.682142 |
Target: 5'- cGGACCUGCGuCGuCGUggGCGCCgggGCg- -3' miRNA: 3'- aUUUGGACGC-GCcGCA--CGCGGa--CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104909 | 0.66 | 0.67184 |
Target: 5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3' miRNA: 3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104738 | 0.68 | 0.5684 |
Target: 5'- cGAGCUUGC-CGGCGgccaGCGCCaGCg- -3' miRNA: 3'- aUUUGGACGcGCCGCa---CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104534 | 0.67 | 0.588954 |
Target: 5'- -cGGCgCUGCGCGGCGgccccgGgGCC-GCUa -3' miRNA: 3'- auUUG-GACGCGCCGCa-----CgCGGaCGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104448 | 0.68 | 0.537931 |
Target: 5'- --cACCgcgGCGCGcagguacaCGUGCGCCUGCc- -3' miRNA: 3'- auuUGGa--CGCGCc-------GCACGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104415 | 0.72 | 0.347414 |
Target: 5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3' miRNA: 3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 104383 | 0.66 | 0.702609 |
Target: 5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3' miRNA: 3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 102993 | 0.68 | 0.558189 |
Target: 5'- --cGCC-GuCGCGGCGUGCGCggGCg- -3' miRNA: 3'- auuUGGaC-GCGCCGCACGCGgaCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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