miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 118449 0.67 0.630389
Target:  5'- ---uCCUGCugGUGGCGgccucGUGCCUGCg- -3'
miRNA:   3'- auuuGGACG--CGCCGCa----CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 118256 1.03 0.002368
Target:  5'- gUAAACCUGCGCGGCGUGCGCCUGCUUu -3'
miRNA:   3'- -AUUUGGACGCGCCGCACGCGGACGAA- -5'
6361 5' -59.2 NC_001847.1 + 115702 0.71 0.379867
Target:  5'- aGAGCCgGCuGCGGCccguGUGCGCUUGCc- -3'
miRNA:   3'- aUUUGGaCG-CGCCG----CACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 113512 0.66 0.682142
Target:  5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3'
miRNA:   3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 113415 0.68 0.527896
Target:  5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5'
6361 5' -59.2 NC_001847.1 + 112531 0.66 0.692402
Target:  5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3'
miRNA:   3'- auuuGGACGCGCCGcac-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 110808 0.71 0.405504
Target:  5'- aAGGCCgcGCGCGGCGUggcGCGCCaccGCUc -3'
miRNA:   3'- aUUUGGa-CGCGCCGCA---CGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 106698 0.66 0.692402
Target:  5'- -cGGCCauagGCacuuuccaguugGCGGCGUGCGCCaggGCg- -3'
miRNA:   3'- auUUGGa---CG------------CGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 106622 0.67 0.609637
Target:  5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3'
miRNA:   3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 106119 0.71 0.396838
Target:  5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 105966 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 105564 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 105327 0.66 0.682142
Target:  5'- cGGACCUGCGuCGuCGUggGCGCCgggGCg- -3'
miRNA:   3'- aUUUGGACGC-GCcGCA--CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 104909 0.66 0.67184
Target:  5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 104738 0.68 0.5684
Target:  5'- cGAGCUUGC-CGGCGgccaGCGCCaGCg- -3'
miRNA:   3'- aUUUGGACGcGCCGCa---CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 104534 0.67 0.588954
Target:  5'- -cGGCgCUGCGCGGCGgccccgGgGCC-GCUa -3'
miRNA:   3'- auUUG-GACGCGCCGCa-----CgCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 104448 0.68 0.537931
Target:  5'- --cACCgcgGCGCGcagguacaCGUGCGCCUGCc- -3'
miRNA:   3'- auuUGGa--CGCGCc-------GCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 104415 0.72 0.347414
Target:  5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3'
miRNA:   3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 104383 0.66 0.702609
Target:  5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 102993 0.68 0.558189
Target:  5'- --cGCC-GuCGCGGCGUGCGCggGCg- -3'
miRNA:   3'- auuUGGaC-GCGCCGCACGCGgaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.