miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 102114 0.66 0.67184
Target:  5'- ---uCCUGCGCcGCGUccGCGCCUcGCc- -3'
miRNA:   3'- auuuGGACGCGcCGCA--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 101630 0.68 0.54803
Target:  5'- --cGCCUcCGCGGCG-GCGCCcGCc- -3'
miRNA:   3'- auuUGGAcGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 101451 0.68 0.537931
Target:  5'- --cGCCgccGCGCcGCGaGCGCCUGCg- -3'
miRNA:   3'- auuUGGa--CGCGcCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 101263 0.7 0.4599
Target:  5'- -cGGCCacGCGCGGCG-GCGCCuccUGCa- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGG---ACGaa -5'
6361 5' -59.2 NC_001847.1 + 100567 0.67 0.630389
Target:  5'- cGGGCCuUGCGCaggucGGCGUGCagcuuggcgGCCUGUg- -3'
miRNA:   3'- aUUUGG-ACGCG-----CCGCACG---------CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 99210 0.67 0.620008
Target:  5'- -cGGCC-GCGCGGCGgcGCGCC-GCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 95657 0.74 0.25601
Target:  5'- gGAGCCUGCGCGGCGgGCuggucuccaugGCaCUGCa- -3'
miRNA:   3'- aUUUGGACGCGCCGCaCG-----------CG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 95126 0.67 0.599283
Target:  5'- cGAGCCUGCagucgcCGGCGcUGCGCUUGg-- -3'
miRNA:   3'- aUUUGGACGc-----GCCGC-ACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 94359 0.73 0.295521
Target:  5'- aGGACgCUgGCGCGGCG-GCGUCUGCc- -3'
miRNA:   3'- aUUUG-GA-CGCGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 94222 0.66 0.692402
Target:  5'- gGAGCU--CGCGGCGggGCGCCcGCg- -3'
miRNA:   3'- aUUUGGacGCGCCGCa-CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 94213 0.66 0.655292
Target:  5'- -cGACCUGCgGCGGCGgcacgaaaaggccguUGUGCC-GCg- -3'
miRNA:   3'- auUUGGACG-CGCCGC---------------ACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 93627 0.66 0.702609
Target:  5'- -cGGCCgGCGCGGCcgcgGaCGUCUGCa- -3'
miRNA:   3'- auUUGGaCGCGCCGca--C-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 90775 0.71 0.405504
Target:  5'- --cGCCUGCGCGGCGagGgGCCcGUUc -3'
miRNA:   3'- auuUGGACGCGCCGCa-CgCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 88243 0.75 0.226482
Target:  5'- gAGGCCgGCGCGGCGcgggGCGCCggGCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa---CGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 87461 0.67 0.599283
Target:  5'- -cGGCCc-CGCGGCGcGCGCCcGCUUc -3'
miRNA:   3'- auUUGGacGCGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 87062 0.72 0.331947
Target:  5'- -cAGCUUccGCGCGGCGUGCGCCcccGCc- -3'
miRNA:   3'- auUUGGA--CGCGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 86511 0.7 0.423189
Target:  5'- --cACCgucGCGCGGCGgcuggGCGCCcGCg- -3'
miRNA:   3'- auuUGGa--CGCGCCGCa----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 86435 0.68 0.5684
Target:  5'- -cGGCgCUGCGCGGCGcggGCaGCgUGCa- -3'
miRNA:   3'- auUUG-GACGCGCCGCa--CG-CGgACGaa -5'
6361 5' -59.2 NC_001847.1 + 85185 0.66 0.702609
Target:  5'- -cGGCCUGCGCGuacuCG-GCGCCggGCa- -3'
miRNA:   3'- auUUGGACGCGCc---GCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 84542 0.69 0.488512
Target:  5'- cGGGCgggGCGgGGCGUGCGCCUcGUa- -3'
miRNA:   3'- aUUUGga-CGCgCCGCACGCGGA-CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.