miRNA display CGI


Results 41 - 60 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 49449 0.7 0.414289
Target:  5'- cGAACgUGUuugucuuucacgGCGGCGaGCGCCUGCg- -3'
miRNA:   3'- aUUUGgACG------------CGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 133529 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 30716 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 10858 0.7 0.423189
Target:  5'- -uGGCCgagGCGCGGCGggcgcggGCGCCcagGCa- -3'
miRNA:   3'- auUUGGa--CGCGCCGCa------CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 86511 0.7 0.423189
Target:  5'- --cACCgucGCGCGGCGgcuggGCGCCcGCg- -3'
miRNA:   3'- auuUGGa--CGCGCCGCa----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 133921 0.7 0.432203
Target:  5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3'
miRNA:   3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 31108 0.7 0.432203
Target:  5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3'
miRNA:   3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 70263 0.7 0.432203
Target:  5'- ------cGCGCGGCGUugcucucggcgcGCGCCUGCg- -3'
miRNA:   3'- auuuggaCGCGCCGCA------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 2187 0.7 0.450562
Target:  5'- --cGCCUGgGCGGCGUGCGg--GCg- -3'
miRNA:   3'- auuUGGACgCGCCGCACGCggaCGaa -5'
6361 5' -59.2 NC_001847.1 + 68853 0.7 0.450562
Target:  5'- cGGGCgCgagGCgGCGGCGUGCGCCggGCc- -3'
miRNA:   3'- aUUUG-Ga--CG-CGCCGCACGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 101263 0.7 0.4599
Target:  5'- -cGGCCacGCGCGGCG-GCGCCuccUGCa- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGG---ACGaa -5'
6361 5' -59.2 NC_001847.1 + 68060 0.7 0.4599
Target:  5'- -cGGCCU-CGCGGC--GCGCCUGCg- -3'
miRNA:   3'- auUUGGAcGCGCCGcaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 33579 0.7 0.4599
Target:  5'- -cGGCCgUGCGCGGUGccgacgacguccUGCGCCaGCUg -3'
miRNA:   3'- auUUGG-ACGCGCCGC------------ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 59207 0.69 0.46934
Target:  5'- cGAGCCgucCGCGcCGUGCGCUUGCa- -3'
miRNA:   3'- aUUUGGac-GCGCcGCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 67194 0.69 0.46934
Target:  5'- ---cCCUGcCGCGGCuGUGUGCCgucgUGCUg -3'
miRNA:   3'- auuuGGAC-GCGCCG-CACGCGG----ACGAa -5'
6361 5' -59.2 NC_001847.1 + 4219 0.69 0.478879
Target:  5'- aAAGcCCUGCGCGGUGccggcgcGCGCCgGCa- -3'
miRNA:   3'- aUUU-GGACGCGCCGCa------CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 81039 0.69 0.478879
Target:  5'- --cGCCUcccGCGCGGCGaGCGCCU-CUa -3'
miRNA:   3'- auuUGGA---CGCGCCGCaCGCGGAcGAa -5'
6361 5' -59.2 NC_001847.1 + 119680 0.69 0.488512
Target:  5'- ---gUCUGCGCGcCGUGCGCCgccacGCUUu -3'
miRNA:   3'- auuuGGACGCGCcGCACGCGGa----CGAA- -5'
6361 5' -59.2 NC_001847.1 + 57005 0.69 0.488512
Target:  5'- aUGAGCCgcagGC-CGGCGcGCGCCcGCUUu -3'
miRNA:   3'- -AUUUGGa---CGcGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 29988 0.69 0.488512
Target:  5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.