miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 57005 0.69 0.488512
Target:  5'- aUGAGCCgcagGC-CGGCGcGCGCCcGCUUu -3'
miRNA:   3'- -AUUUGGa---CGcGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 29988 0.69 0.488512
Target:  5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 73558 0.69 0.498234
Target:  5'- -cGGCCuuugagUGCGCGGUGcUGUGUCUGCa- -3'
miRNA:   3'- auUUGG------ACGCGCCGC-ACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 43890 0.69 0.498234
Target:  5'- -cGACCccaugUGCGCcGCGUGCGgCUGCa- -3'
miRNA:   3'- auUUGG-----ACGCGcCGCACGCgGACGaa -5'
6361 5' -59.2 NC_001847.1 + 18971 0.69 0.498234
Target:  5'- -cGACCaGCGCGGCcgcgGCGCCcGCg- -3'
miRNA:   3'- auUUGGaCGCGCCGca--CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 13436 0.69 0.502147
Target:  5'- gGGGCCUGCGCuggcuguaucuagcgGGCGcGCaCCUGCUc -3'
miRNA:   3'- aUUUGGACGCG---------------CCGCaCGcGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 29068 0.69 0.508042
Target:  5'- -cGGCC-GCGCGGCGccgGCGCCccUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa--CGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 131819 0.69 0.508042
Target:  5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3'
miRNA:   3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 13927 0.69 0.508042
Target:  5'- gAGGCCcGCGaCGGCGUcauGCGCgaGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGCA---CGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 29006 0.69 0.508042
Target:  5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3'
miRNA:   3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 131881 0.69 0.508042
Target:  5'- -cGGCC-GCGCGGCGccgGCGCCccUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa--CGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 29422 0.69 0.511988
Target:  5'- -uGACCUGCGCgccagcgagcgcuggGGCGUgGCGCCgcccGCg- -3'
miRNA:   3'- auUUGGACGCG---------------CCGCA-CGCGGa---CGaa -5'
6361 5' -59.2 NC_001847.1 + 35306 0.69 0.517931
Target:  5'- --cGCCgagcgGCGCgcgcuggaagcgGGCGUGCGCCUGg-- -3'
miRNA:   3'- auuUGGa----CGCG------------CCGCACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 29166 0.68 0.527896
Target:  5'- cAAACCUGCacccguacuacGCGGaCGUGCuGCCguUGCUg -3'
miRNA:   3'- aUUUGGACG-----------CGCC-GCACG-CGG--ACGAa -5'
6361 5' -59.2 NC_001847.1 + 31954 0.68 0.527896
Target:  5'- cGAGCCUGcCGCGGCG-GCGgCggGCc- -3'
miRNA:   3'- aUUUGGAC-GCGCCGCaCGCgGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 59927 0.68 0.527896
Target:  5'- aGGACCUGgccuCGCugacCGUGCGCCUGCa- -3'
miRNA:   3'- aUUUGGAC----GCGcc--GCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 22161 0.68 0.527896
Target:  5'- aAAGCCgGCGCaGCGgGCcgGCCUGCUc -3'
miRNA:   3'- aUUUGGaCGCGcCGCaCG--CGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 10602 0.68 0.527896
Target:  5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5'
6361 5' -59.2 NC_001847.1 + 62132 0.68 0.527896
Target:  5'- cAggUCUGUgaGCGGCGUGCGCaugGCc- -3'
miRNA:   3'- aUuuGGACG--CGCCGCACGCGga-CGaa -5'
6361 5' -59.2 NC_001847.1 + 113415 0.68 0.527896
Target:  5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.