miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 34142 0.66 0.661505
Target:  5'- -uGGCC-GcCGCGGCGaGCGCgCUGCg- -3'
miRNA:   3'- auUUGGaC-GCGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 34267 0.73 0.281846
Target:  5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3'
miRNA:   3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 34562 0.67 0.620008
Target:  5'- -cGGCCgcUGCaGCGGCGgcaGCGCCUgGCg- -3'
miRNA:   3'- auUUGG--ACG-CGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 34761 0.67 0.640771
Target:  5'- cGAGCUgGCGCGGCuGcGCGCCgcgGCc- -3'
miRNA:   3'- aUUUGGaCGCGCCG-CaCGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 35201 0.66 0.702609
Target:  5'- gGAGCgC-GCGCGGCuggGCGCcCUGCg- -3'
miRNA:   3'- aUUUG-GaCGCGCCGca-CGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 35306 0.69 0.517931
Target:  5'- --cGCCgagcgGCGCgcgcuggaagcgGGCGUGCGCCUGg-- -3'
miRNA:   3'- auuUGGa----CGCG------------CCGCACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 35925 0.66 0.682142
Target:  5'- aUGGACCggcggucGCGCGcGCuUGCGCCUGg-- -3'
miRNA:   3'- -AUUUGGa------CGCGC-CGcACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 36153 0.66 0.691378
Target:  5'- cGGGCCUGCaGCGGC-UGCaggcaacGCUUGCg- -3'
miRNA:   3'- aUUUGGACG-CGCCGcACG-------CGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 38549 0.68 0.558189
Target:  5'- aAAACCcGCGUuacuGGCa-GCGCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG----CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 39834 0.66 0.682142
Target:  5'- ---cCCUGC-CGGCGccGCGCCUGg-- -3'
miRNA:   3'- auuuGGACGcGCCGCa-CGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 39841 0.72 0.324405
Target:  5'- ---uCCUGCGUGGCGcGCGCCaGCc- -3'
miRNA:   3'- auuuGGACGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 41994 0.68 0.5684
Target:  5'- cGAGCgCUGCGuCGGCGcggaacgaagcUGCGCCgUGCc- -3'
miRNA:   3'- aUUUG-GACGC-GCCGC-----------ACGCGG-ACGaa -5'
6361 5' -59.2 NC_001847.1 + 43139 0.67 0.620008
Target:  5'- cGGGCCcGCG-GGCGcUGCGCCcGCa- -3'
miRNA:   3'- aUUUGGaCGCgCCGC-ACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 43275 0.66 0.701591
Target:  5'- --cACCUGCuGCGacgccgcGCGUGCGCggGCUg -3'
miRNA:   3'- auuUGGACG-CGC-------CGCACGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 43890 0.69 0.498234
Target:  5'- -cGACCccaugUGCGCcGCGUGCGgCUGCa- -3'
miRNA:   3'- auUUGG-----ACGCGcCGCACGCgGACGaa -5'
6361 5' -59.2 NC_001847.1 + 44085 0.72 0.316992
Target:  5'- --uGCCUGCuGCGGCGUcuGCGCCcGCc- -3'
miRNA:   3'- auuUGGACG-CGCCGCA--CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 44288 0.66 0.692402
Target:  5'- --cACCggcgGCGCGGCGcgGCGCg-GCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa-CGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 44914 0.67 0.630389
Target:  5'- gGGGCgUGCGCGaCGcGCGCgUGCUg -3'
miRNA:   3'- aUUUGgACGCGCcGCaCGCGgACGAa -5'
6361 5' -59.2 NC_001847.1 + 45672 0.67 0.588954
Target:  5'- cAGGCUUGCGaCGGCG-GCGCCg---- -3'
miRNA:   3'- aUUUGGACGC-GCCGCaCGCGGacgaa -5'
6361 5' -59.2 NC_001847.1 + 48156 0.67 0.627274
Target:  5'- cGGGCCgGCGCgcgccggcccggccGGCG-GCGuCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG--------------CCGCaCGC-GGACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.