miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 28814 0.68 0.54803
Target:  5'- --cGCCguucacgcagGCGCGGUgGUGCGgCUGCUa -3'
miRNA:   3'- auuUGGa---------CGCGCCG-CACGCgGACGAa -5'
6361 5' -59.2 NC_001847.1 + 29006 0.69 0.508042
Target:  5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3'
miRNA:   3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 29068 0.69 0.508042
Target:  5'- -cGGCC-GCGCGGCGccgGCGCCccUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa--CGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 29166 0.68 0.527896
Target:  5'- cAAACCUGCacccguacuacGCGGaCGUGCuGCCguUGCUg -3'
miRNA:   3'- aUUUGGACG-----------CGCC-GCACG-CGG--ACGAa -5'
6361 5' -59.2 NC_001847.1 + 29422 0.69 0.511988
Target:  5'- -uGACCUGCGCgccagcgagcgcuggGGCGUgGCGCCgcccGCg- -3'
miRNA:   3'- auUUGGACGCG---------------CCGCA-CGCGGa---CGaa -5'
6361 5' -59.2 NC_001847.1 + 29988 0.69 0.488512
Target:  5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 30060 0.66 0.67184
Target:  5'- --uGCCgGCGCGGUG-GCGCg-GCUg -3'
miRNA:   3'- auuUGGaCGCGCCGCaCGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 30185 0.66 0.67184
Target:  5'- cGGACCuggccgacgcggUGCGCGGCGcgcGCGCCgaaGCc- -3'
miRNA:   3'- aUUUGG------------ACGCGCCGCa--CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 30611 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 30716 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 30752 0.66 0.692402
Target:  5'- cGAGCggcGCGCuGGCGcGCGCCgUGCUg -3'
miRNA:   3'- aUUUGga-CGCG-CCGCaCGCGG-ACGAa -5'
6361 5' -59.2 NC_001847.1 + 31108 0.7 0.432203
Target:  5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3'
miRNA:   3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 31954 0.68 0.527896
Target:  5'- cGAGCCUGcCGCGGCG-GCGgCggGCc- -3'
miRNA:   3'- aUUUGGAC-GCGCCGCaCGCgGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 32162 0.67 0.640771
Target:  5'- --cGCC-GCGaCGGCGUGCGCg-GCg- -3'
miRNA:   3'- auuUGGaCGC-GCCGCACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 32629 0.73 0.28862
Target:  5'- --cACCgGCGCGGCGcGCGCuCUGCc- -3'
miRNA:   3'- auuUGGaCGCGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 33060 0.71 0.371567
Target:  5'- -uGACCgggucgcGCGCGGCccGCGCCUGCc- -3'
miRNA:   3'- auUUGGa------CGCGCCGcaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 33153 0.71 0.36339
Target:  5'- -uGGCgaGCGCGGCGguUGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGC--ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 33318 0.67 0.588954
Target:  5'- -cAGCCUGUuguucGUGGCG-GCGCgCUGCg- -3'
miRNA:   3'- auUUGGACG-----CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 33579 0.7 0.4599
Target:  5'- -cGGCCgUGCGCGGUGccgacgacguccUGCGCCaGCUg -3'
miRNA:   3'- auUUGG-ACGCGCCGC------------ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 34103 0.71 0.369921
Target:  5'- -uGGCUcGCGCGGCGgcggagccugcgGCGCCUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-----------CGCGGACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.