miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 13436 0.69 0.502147
Target:  5'- gGGGCCUGCGCuggcuguaucuagcgGGCGcGCaCCUGCUc -3'
miRNA:   3'- aUUUGGACGCG---------------CCGCaCGcGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 29422 0.69 0.511988
Target:  5'- -uGACCUGCGCgccagcgagcgcuggGGCGUgGCGCCgcccGCg- -3'
miRNA:   3'- auUUGGACGCG---------------CCGCA-CGCGGa---CGaa -5'
6361 5' -59.2 NC_001847.1 + 131575 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 79016 0.73 0.309707
Target:  5'- gGAGgCUGCGCGGCGUGCaccGCCaaaugGCa- -3'
miRNA:   3'- aUUUgGACGCGCCGCACG---CGGa----CGaa -5'
6361 5' -59.2 NC_001847.1 + 33153 0.71 0.36339
Target:  5'- -uGGCgaGCGCGGCGguUGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGC--ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 82593 0.71 0.388292
Target:  5'- gAAGCgCU-CGCGGCG-GCGCCUGUg- -3'
miRNA:   3'- aUUUG-GAcGCGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 133529 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 10858 0.7 0.423189
Target:  5'- -uGGCCgagGCGCGGCGggcgcggGCGCCcagGCa- -3'
miRNA:   3'- auUUGGa--CGCGCCGCa------CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 33579 0.7 0.4599
Target:  5'- -cGGCCgUGCGCGGUGccgacgacguccUGCGCCaGCUg -3'
miRNA:   3'- auUUGG-ACGCGCCGC------------ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 4219 0.69 0.478879
Target:  5'- aAAGcCCUGCGCGGUGccggcgcGCGCCgGCa- -3'
miRNA:   3'- aUUU-GGACGCGCCGCa------CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 51545 0.66 0.651146
Target:  5'- gGAGgCUGCGC-GCGcGCGCgUGCUc -3'
miRNA:   3'- aUUUgGACGCGcCGCaCGCGgACGAa -5'
6361 5' -59.2 NC_001847.1 + 133424 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 113415 0.68 0.527896
Target:  5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5'
6361 5' -59.2 NC_001847.1 + 28069 0.68 0.54803
Target:  5'- aAAACCUGCcCGGUcuggugcuGUgGCGCCUGCc- -3'
miRNA:   3'- aUUUGGACGcGCCG--------CA-CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 86435 0.68 0.5684
Target:  5'- -cGGCgCUGCGCGGCGcggGCaGCgUGCa- -3'
miRNA:   3'- auUUG-GACGCGCCGCa--CG-CGgACGaa -5'
6361 5' -59.2 NC_001847.1 + 55458 0.68 0.578657
Target:  5'- --cGCCgGCGgGGCGcGCGCCgcGCUa -3'
miRNA:   3'- auuUGGaCGCgCCGCaCGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 87461 0.67 0.599283
Target:  5'- -cGGCCc-CGCGGCGcGCGCCcGCUUc -3'
miRNA:   3'- auUUGGacGCGCCGCaCGCGGaCGAA- -5'
6361 5' -59.2 NC_001847.1 + 106622 0.67 0.609637
Target:  5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3'
miRNA:   3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 48156 0.67 0.627274
Target:  5'- cGGGCCgGCGCgcgccggcccggccGGCG-GCGuCCUGCUg -3'
miRNA:   3'- aUUUGGaCGCG--------------CCGCaCGC-GGACGAa -5'
6361 5' -59.2 NC_001847.1 + 32162 0.67 0.640771
Target:  5'- --cGCC-GCGaCGGCGUGCGCg-GCg- -3'
miRNA:   3'- auuUGGaCGC-GCCGCACGCGgaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.