miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 87062 0.72 0.331947
Target:  5'- -cAGCUUccGCGCGGCGUGCGCCcccGCc- -3'
miRNA:   3'- auUUGGA--CGCGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 125519 0.72 0.331947
Target:  5'- cGGGCCgGCGCGGCGgcggGCGCa-GCUa -3'
miRNA:   3'- aUUUGGaCGCGCCGCa---CGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 104415 0.72 0.347414
Target:  5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3'
miRNA:   3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 20077 0.72 0.347414
Target:  5'- --uGCCUGCGCucggGGCGaGCGCCaGCUg -3'
miRNA:   3'- auuUGGACGCG----CCGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 1602 0.72 0.347414
Target:  5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3'
miRNA:   3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 33153 0.71 0.36339
Target:  5'- -uGGCgaGCGCGGCGguUGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGC--ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 34103 0.71 0.369921
Target:  5'- -uGGCUcGCGCGGCGgcggagccugcgGCGCCUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-----------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 33060 0.71 0.371567
Target:  5'- -uGACCgggucgcGCGCGGCccGCGCCUGCc- -3'
miRNA:   3'- auUUGGa------CGCGCCGcaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 53716 0.71 0.371567
Target:  5'- gUGGGCCgGCGgcUGGCGcugUGCGCCUGCg- -3'
miRNA:   3'- -AUUUGGaCGC--GCCGC---ACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 115702 0.71 0.379867
Target:  5'- aGAGCCgGCuGCGGCccguGUGCGCUUGCc- -3'
miRNA:   3'- aUUUGGaCG-CGCCG----CACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 131920 0.71 0.388292
Target:  5'- cAAGCCgcggcgGCGCGGaggcaCGUGCGCCgGCg- -3'
miRNA:   3'- aUUUGGa-----CGCGCC-----GCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 82593 0.71 0.388292
Target:  5'- gAAGCgCU-CGCGGCG-GCGCCUGUg- -3'
miRNA:   3'- aUUUG-GAcGCGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 106119 0.71 0.396838
Target:  5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 3306 0.71 0.396838
Target:  5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 28185 0.71 0.396838
Target:  5'- --uACCUG-GCGGcCGcGCGCCUGCg- -3'
miRNA:   3'- auuUGGACgCGCC-GCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 18689 0.71 0.405504
Target:  5'- aGAACC-GCGcCGcGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGC-GC-CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 90775 0.71 0.405504
Target:  5'- --cGCCUGCGCGGCGagGgGCCcGUUc -3'
miRNA:   3'- auuUGGACGCGCCGCa-CgCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 110808 0.71 0.405504
Target:  5'- aAGGCCgcGCGCGGCGUggcGCGCCaccGCUc -3'
miRNA:   3'- aUUUGGa-CGCGCCGCA---CGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 30716 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 79986 0.7 0.414289
Target:  5'- cGAGCCgcUGCGCGGCGgugacgccccGCGCCcGCg- -3'
miRNA:   3'- aUUUGG--ACGCGCCGCa---------CGCGGaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.