miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 35925 0.66 0.682142
Target:  5'- aUGGACCggcggucGCGCGcGCuUGCGCCUGg-- -3'
miRNA:   3'- -AUUUGGa------CGCGC-CGcACGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 39834 0.66 0.682142
Target:  5'- ---cCCUGC-CGGCGccGCGCCUGg-- -3'
miRNA:   3'- auuuGGACGcGCCGCa-CGCGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 105327 0.66 0.682142
Target:  5'- cGGACCUGCGuCGuCGUggGCGCCgggGCg- -3'
miRNA:   3'- aUUUGGACGC-GCcGCA--CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 10699 0.66 0.682142
Target:  5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3'
miRNA:   3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 75949 0.66 0.682142
Target:  5'- --cGCCacaCGCGGCGUGUGCUcguUGCa- -3'
miRNA:   3'- auuUGGac-GCGCCGCACGCGG---ACGaa -5'
6361 5' -59.2 NC_001847.1 + 6109 0.66 0.682142
Target:  5'- --cGCCcgcgagGCGCGGCGcgaGCGCCUcGCc- -3'
miRNA:   3'- auuUGGa-----CGCGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 83505 0.66 0.682142
Target:  5'- --cGCCgcgGCGCuGCGUGCcuuCCUGCg- -3'
miRNA:   3'- auuUGGa--CGCGcCGCACGc--GGACGaa -5'
6361 5' -59.2 NC_001847.1 + 113512 0.66 0.682142
Target:  5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3'
miRNA:   3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 80737 0.66 0.682142
Target:  5'- gAGGCCaacCGCGGCG-GCGCCcGCc- -3'
miRNA:   3'- aUUUGGac-GCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 49033 0.66 0.682142
Target:  5'- gGAGCCgcucGUGCaGCGUGCGCguaaagCUGCg- -3'
miRNA:   3'- aUUUGGa---CGCGcCGCACGCG------GACGaa -5'
6361 5' -59.2 NC_001847.1 + 79072 0.66 0.67184
Target:  5'- gGAGCCggGCGCGuGCGacgUGUGCCcgUGCg- -3'
miRNA:   3'- aUUUGGa-CGCGC-CGC---ACGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 30185 0.66 0.67184
Target:  5'- cGGACCuggccgacgcggUGCGCGGCGcgcGCGCCgaaGCc- -3'
miRNA:   3'- aUUUGG------------ACGCGCCGCa--CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 6487 0.66 0.67184
Target:  5'- -cGGCCUGCaggucguagguaGCGGCGU-CGCCgGCg- -3'
miRNA:   3'- auUUGGACG------------CGCCGCAcGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 2096 0.66 0.67184
Target:  5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 104909 0.66 0.67184
Target:  5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 102114 0.66 0.67184
Target:  5'- ---uCCUGCGCcGCGUccGCGCCUcGCc- -3'
miRNA:   3'- auuuGGACGCGcCGCA--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 118747 0.66 0.67184
Target:  5'- --cGCCccGCGCGGC-UGCGCgaGCg- -3'
miRNA:   3'- auuUGGa-CGCGCCGcACGCGgaCGaa -5'
6361 5' -59.2 NC_001847.1 + 30060 0.66 0.67184
Target:  5'- --uGCCgGCGCGGUG-GCGCg-GCUg -3'
miRNA:   3'- auuUGGaCGCGCCGCaCGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 72126 0.66 0.661505
Target:  5'- -cGGCCUuCGCGcGCG-GCGCgUGCUg -3'
miRNA:   3'- auUUGGAcGCGC-CGCaCGCGgACGAa -5'
6361 5' -59.2 NC_001847.1 + 34142 0.66 0.661505
Target:  5'- -uGGCC-GcCGCGGCGaGCGCgCUGCg- -3'
miRNA:   3'- auUUGGaC-GCGCCGCaCGCG-GACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.