miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 133921 0.7 0.432203
Target:  5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3'
miRNA:   3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 133565 0.66 0.692402
Target:  5'- cGAGCggcGCGCuGGCGcGCGCCgUGCUg -3'
miRNA:   3'- aUUUGga-CGCG-CCGCaCGCGG-ACGAa -5'
6361 5' -59.2 NC_001847.1 + 133529 0.7 0.414289
Target:  5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3'
miRNA:   3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5'
6361 5' -59.2 NC_001847.1 + 133424 0.67 0.640771
Target:  5'- -uGGCCgcgGCGCGGCG-GCGgCUGa-- -3'
miRNA:   3'- auUUGGa--CGCGCCGCaCGCgGACgaa -5'
6361 5' -59.2 NC_001847.1 + 133368 0.68 0.5684
Target:  5'- gGGACCUGCGUGGCGggccucaucgaUGC-CCUGg-- -3'
miRNA:   3'- aUUUGGACGCGCCGC-----------ACGcGGACgaa -5'
6361 5' -59.2 NC_001847.1 + 132801 0.69 0.488512
Target:  5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3'
miRNA:   3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 131920 0.71 0.388292
Target:  5'- cAAGCCgcggcgGCGCGGaggcaCGUGCGCCgGCg- -3'
miRNA:   3'- aUUUGGa-----CGCGCC-----GCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 131881 0.69 0.508042
Target:  5'- -cGGCC-GCGCGGCGccgGCGCCccUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa--CGCGG--ACGaa -5'
6361 5' -59.2 NC_001847.1 + 131819 0.69 0.508042
Target:  5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3'
miRNA:   3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 131725 0.67 0.620008
Target:  5'- -cGGCCUGCGUGGCaUGaGCCgccGCUa -3'
miRNA:   3'- auUUGGACGCGCCGcACgCGGa--CGAa -5'
6361 5' -59.2 NC_001847.1 + 131669 0.68 0.5684
Target:  5'- cGAGCUcucgGCGCgccGGCGcGCGCUUGCUg -3'
miRNA:   3'- aUUUGGa---CGCG---CCGCaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 131575 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 129251 0.66 0.702609
Target:  5'- -cAAUCUGCGaCGGCGcgGCcGCcCUGCg- -3'
miRNA:   3'- auUUGGACGC-GCCGCa-CG-CG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 125519 0.72 0.331947
Target:  5'- cGGGCCgGCGCGGCGgcggGCGCa-GCUa -3'
miRNA:   3'- aUUUGGaCGCGCCGCa---CGCGgaCGAa -5'
6361 5' -59.2 NC_001847.1 + 124974 0.68 0.527896
Target:  5'- aAAGCCgGCGCaGCGgGCcgGCCUGCUc -3'
miRNA:   3'- aUUUGGaCGCGcCGCaCG--CGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 123793 0.76 0.183398
Target:  5'- gGGGCCUGCGCGGCGgcggcagcggcagGCGCCguccugGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGCa------------CGCGGa-----CGaa -5'
6361 5' -59.2 NC_001847.1 + 121773 0.68 0.582772
Target:  5'- cGGACgUGCGCGccguucgcggcuggaGCGUccucgcggGCGCCUGCUc -3'
miRNA:   3'- aUUUGgACGCGC---------------CGCA--------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 120198 0.67 0.640771
Target:  5'- -uGGCC-GCGCGaGCG-GCGCCcGCUc -3'
miRNA:   3'- auUUGGaCGCGC-CGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 119680 0.69 0.488512
Target:  5'- ---gUCUGCGCGcCGUGCGCCgccacGCUUu -3'
miRNA:   3'- auuuGGACGCGCcGCACGCGGa----CGAA- -5'
6361 5' -59.2 NC_001847.1 + 118747 0.66 0.67184
Target:  5'- --cGCCccGCGCGGC-UGCGCgaGCg- -3'
miRNA:   3'- auuUGGa-CGCGCCGcACGCGgaCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.