miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 123793 0.76 0.183398
Target:  5'- gGGGCCUGCGCGGCGgcggcagcggcagGCGCCguccugGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGCa------------CGCGGa-----CGaa -5'
6361 5' -59.2 NC_001847.1 + 28185 0.71 0.396838
Target:  5'- --uACCUG-GCGGcCGcGCGCCUGCg- -3'
miRNA:   3'- auuUGGACgCGCC-GCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 18689 0.71 0.405504
Target:  5'- aGAACC-GCGcCGcGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGC-GC-CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 85185 0.66 0.702609
Target:  5'- -cGGCCUGCGCGuacuCG-GCGCCggGCa- -3'
miRNA:   3'- auUUGGACGCGCc---GCaCGCGGa-CGaa -5'
6361 5' -59.2 NC_001847.1 + 34267 0.73 0.281846
Target:  5'- cAGACCggcGCGCGGCGgcuggGCGCCgcGCUc -3'
miRNA:   3'- aUUUGGa--CGCGCCGCa----CGCGGa-CGAa -5'
6361 5' -59.2 NC_001847.1 + 56072 0.73 0.281846
Target:  5'- gAAGCCUGCGCGGCugagcGCGCCcggggUGCg- -3'
miRNA:   3'- aUUUGGACGCGCCGca---CGCGG-----ACGaa -5'
6361 5' -59.2 NC_001847.1 + 27995 0.73 0.301841
Target:  5'- cUGGGCCgcgcugcagcGCGCGGCGUgccgcgcuuacgaGCGCCUGCa- -3'
miRNA:   3'- -AUUUGGa---------CGCGCCGCA-------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 83114 0.73 0.30255
Target:  5'- aUGAGCCccugGCGCGaGCGcuagugcGCGCCUGCUg -3'
miRNA:   3'- -AUUUGGa---CGCGC-CGCa------CGCGGACGAa -5'
6361 5' -59.2 NC_001847.1 + 20077 0.72 0.347414
Target:  5'- --uGCCUGCGCucggGGCGaGCGCCaGCUg -3'
miRNA:   3'- auuUGGACGCG----CCGCaCGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 82593 0.71 0.388292
Target:  5'- gAAGCgCU-CGCGGCG-GCGCCUGUg- -3'
miRNA:   3'- aUUUG-GAcGCGCCGCaCGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 33153 0.71 0.36339
Target:  5'- -uGGCgaGCGCGGCGguUGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGC--ACGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 87062 0.72 0.331947
Target:  5'- -cAGCUUccGCGCGGCGUGCGCCcccGCc- -3'
miRNA:   3'- auUUGGA--CGCGCCGCACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 105564 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 34103 0.71 0.369921
Target:  5'- -uGGCUcGCGCGGCGgcggagccugcgGCGCCUGCc- -3'
miRNA:   3'- auUUGGaCGCGCCGCa-----------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 66235 0.74 0.25601
Target:  5'- cGAACCUcaGCGCGGCG-GCGCUcggcaUGCUg -3'
miRNA:   3'- aUUUGGA--CGCGCCGCaCGCGG-----ACGAa -5'
6361 5' -59.2 NC_001847.1 + 79016 0.73 0.309707
Target:  5'- gGAGgCUGCGCGGCGUGCaccGCCaaaugGCa- -3'
miRNA:   3'- aUUUgGACGCGCCGCACG---CGGa----CGaa -5'
6361 5' -59.2 NC_001847.1 + 53716 0.71 0.371567
Target:  5'- gUGGGCCgGCGgcUGGCGcugUGCGCCUGCg- -3'
miRNA:   3'- -AUUUGGaCGC--GCCGC---ACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 106119 0.71 0.396838
Target:  5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 95657 0.74 0.25601
Target:  5'- gGAGCCUGCGCGGCGgGCuggucuccaugGCaCUGCa- -3'
miRNA:   3'- aUUUGGACGCGCCGCaCG-----------CG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 131575 0.73 0.28862
Target:  5'- cGGACCUGCaGCuGGC--GCGCCUGCUg -3'
miRNA:   3'- aUUUGGACG-CG-CCGcaCGCGGACGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.