miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 5' -59.2 NC_001847.1 + 1570 0.66 0.702609
Target:  5'- gAGGCCaGCaCGGCGcGCGCCaGCg- -3'
miRNA:   3'- aUUUGGaCGcGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 1602 0.72 0.347414
Target:  5'- cGGGCCagcGCGCGGCGcacUGCGCCgcgGCa- -3'
miRNA:   3'- aUUUGGa--CGCGCCGC---ACGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 1635 0.68 0.537931
Target:  5'- --cACCgcgGCGCGcagguacaCGUGCGCCUGCc- -3'
miRNA:   3'- auuUGGa--CGCGCc-------GCACGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 2096 0.66 0.67184
Target:  5'- gGGGCCcGCGCGGCGgcGgGCC-GCg- -3'
miRNA:   3'- aUUUGGaCGCGCCGCa-CgCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 2187 0.7 0.450562
Target:  5'- --cGCCUGgGCGGCGUGCGg--GCg- -3'
miRNA:   3'- auuUGGACgCGCCGCACGCggaCGaa -5'
6361 5' -59.2 NC_001847.1 + 2751 0.74 0.249862
Target:  5'- -cGGCCcgGCGCGGCG-GCGCCgGCg- -3'
miRNA:   3'- auUUGGa-CGCGCCGCaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 3002 0.66 0.651146
Target:  5'- ---cCCUGCGCGGCagcaGCGCC-GCc- -3'
miRNA:   3'- auuuGGACGCGCCGca--CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 3153 0.67 0.609637
Target:  5'- --cGCCggcgGCGCGGCGggccgccuccaGCGCCUcGCg- -3'
miRNA:   3'- auuUGGa---CGCGCCGCa----------CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 3306 0.71 0.396838
Target:  5'- -cGGCgaGCGCGGCGcggGCGCC-GCUg -3'
miRNA:   3'- auUUGgaCGCGCCGCa--CGCGGaCGAa -5'
6361 5' -59.2 NC_001847.1 + 3809 0.67 0.609637
Target:  5'- -cGGCCggGCgGCGGCG-GCGCgCUGCc- -3'
miRNA:   3'- auUUGGa-CG-CGCCGCaCGCG-GACGaa -5'
6361 5' -59.2 NC_001847.1 + 4219 0.69 0.478879
Target:  5'- aAAGcCCUGCGCGGUGccggcgcGCGCCgGCa- -3'
miRNA:   3'- aUUU-GGACGCGCCGCa------CGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 6109 0.66 0.682142
Target:  5'- --cGCCcgcgagGCGCGGCGcgaGCGCCUcGCc- -3'
miRNA:   3'- auuUGGa-----CGCGCCGCa--CGCGGA-CGaa -5'
6361 5' -59.2 NC_001847.1 + 6487 0.66 0.67184
Target:  5'- -cGGCCUGCaggucguagguaGCGGCGU-CGCCgGCg- -3'
miRNA:   3'- auUUGGACG------------CGCCGCAcGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 9518 0.67 0.599283
Target:  5'- cGAGCCgagcgggcgGCGCGcuagcguccguGCGUGCGCCaGCg- -3'
miRNA:   3'- aUUUGGa--------CGCGC-----------CGCACGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 9718 0.66 0.692402
Target:  5'- ---cCCUGCGCGGCcacuCGCUUGCc- -3'
miRNA:   3'- auuuGGACGCGCCGcac-GCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 10602 0.68 0.527896
Target:  5'- cGGGCCgGCGcCGGCccGCGCcCUGCUg -3'
miRNA:   3'- aUUUGGaCGC-GCCGcaCGCG-GACGAa -5'
6361 5' -59.2 NC_001847.1 + 10699 0.66 0.682142
Target:  5'- --cGCCcggGCGCGGCccGCGCCgGCc- -3'
miRNA:   3'- auuUGGa--CGCGCCGcaCGCGGaCGaa -5'
6361 5' -59.2 NC_001847.1 + 10858 0.7 0.423189
Target:  5'- -uGGCCgagGCGCGGCGggcgcggGCGCCcagGCa- -3'
miRNA:   3'- auUUGGa--CGCGCCGCa------CGCGGa--CGaa -5'
6361 5' -59.2 NC_001847.1 + 10970 0.67 0.644922
Target:  5'- --uACgUgGCGCGGCGcgcgaagucucuugGCGCCUGCa- -3'
miRNA:   3'- auuUGgA-CGCGCCGCa-------------CGCGGACGaa -5'
6361 5' -59.2 NC_001847.1 + 12219 0.66 0.649072
Target:  5'- -uGGCUUGCGCGGCGcGCGCacacccgaacgGCg- -3'
miRNA:   3'- auUUGGACGCGCCGCaCGCGga---------CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.