Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6361 | 5' | -59.2 | NC_001847.1 | + | 68060 | 0.7 | 0.4599 |
Target: 5'- -cGGCCU-CGCGGC--GCGCCUGCg- -3' miRNA: 3'- auUUGGAcGCGCCGcaCGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 31108 | 0.7 | 0.432203 |
Target: 5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3' miRNA: 3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 101263 | 0.7 | 0.4599 |
Target: 5'- -cGGCCacGCGCGGCG-GCGCCuccUGCa- -3' miRNA: 3'- auUUGGa-CGCGCCGCaCGCGG---ACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 68853 | 0.7 | 0.450562 |
Target: 5'- cGGGCgCgagGCgGCGGCGUGCGCCggGCc- -3' miRNA: 3'- aUUUG-Ga--CG-CGCCGCACGCGGa-CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 2187 | 0.7 | 0.450562 |
Target: 5'- --cGCCUGgGCGGCGUGCGg--GCg- -3' miRNA: 3'- auuUGGACgCGCCGCACGCggaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 133921 | 0.7 | 0.432203 |
Target: 5'- -uGGCCUGCggGCGGCGcGCGCUggaGCUg -3' miRNA: 3'- auUUGGACG--CGCCGCaCGCGGa--CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 86511 | 0.7 | 0.423189 |
Target: 5'- --cACCgucGCGCGGCGgcuggGCGCCcGCg- -3' miRNA: 3'- auuUGGa--CGCGCCGCa----CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 79986 | 0.7 | 0.414289 |
Target: 5'- cGAGCCgcUGCGCGGCGgugacgccccGCGCCcGCg- -3' miRNA: 3'- aUUUGG--ACGCGCCGCa---------CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 30716 | 0.7 | 0.414289 |
Target: 5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3' miRNA: 3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 133529 | 0.7 | 0.414289 |
Target: 5'- cGGugCUGcCGCGGCGcagUGCGCCgcgcGCUg -3' miRNA: 3'- aUUugGAC-GCGCCGC---ACGCGGa---CGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 49449 | 0.7 | 0.414289 |
Target: 5'- cGAACgUGUuugucuuucacgGCGGCGaGCGCCUGCg- -3' miRNA: 3'- aUUUGgACG------------CGCCGCaCGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 10858 | 0.7 | 0.423189 |
Target: 5'- -uGGCCgagGCGCGGCGggcgcggGCGCCcagGCa- -3' miRNA: 3'- auUUGGa--CGCGCCGCa------CGCGGa--CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 78665 | 0.7 | 0.414289 |
Target: 5'- --cGCCUGCGUcgccGGCGUGCGCaCgcggGCg- -3' miRNA: 3'- auuUGGACGCG----CCGCACGCG-Ga---CGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 73558 | 0.69 | 0.498234 |
Target: 5'- -cGGCCuuugagUGCGCGGUGcUGUGUCUGCa- -3' miRNA: 3'- auUUGG------ACGCGCCGC-ACGCGGACGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 67194 | 0.69 | 0.46934 |
Target: 5'- ---cCCUGcCGCGGCuGUGUGCCgucgUGCUg -3' miRNA: 3'- auuuGGAC-GCGCCG-CACGCGG----ACGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 81039 | 0.69 | 0.478879 |
Target: 5'- --cGCCUcccGCGCGGCGaGCGCCU-CUa -3' miRNA: 3'- auuUGGA---CGCGCCGCaCGCGGAcGAa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 119680 | 0.69 | 0.488512 |
Target: 5'- ---gUCUGCGCGcCGUGCGCCgccacGCUUu -3' miRNA: 3'- auuuGGACGCGCcGCACGCGGa----CGAA- -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 29006 | 0.69 | 0.508042 |
Target: 5'- gAGGCCgGCGcCGGCGgcagcgGCGCCcGCg- -3' miRNA: 3'- aUUUGGaCGC-GCCGCa-----CGCGGaCGaa -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 57005 | 0.69 | 0.488512 |
Target: 5'- aUGAGCCgcagGC-CGGCGcGCGCCcGCUUu -3' miRNA: 3'- -AUUUGGa---CGcGCCGCaCGCGGaCGAA- -5' |
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6361 | 5' | -59.2 | NC_001847.1 | + | 29988 | 0.69 | 0.488512 |
Target: 5'- cGGGCCgGCGCGGCGggaGCcGCC-GCUg -3' miRNA: 3'- aUUUGGaCGCGCCGCa--CG-CGGaCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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