miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 3' -58.6 NC_001847.1 + 101263 0.66 0.708133
Target:  5'- cGGCCacGCGCgGCGGCGcCUCCUGc-- -3'
miRNA:   3'- -UUGGa-CGCGaCGCUGCaGAGGACcaa -5'
6362 3' -58.6 NC_001847.1 + 102697 0.66 0.697979
Target:  5'- gGGCgUGUGCUGCGGCagcgCCUGGg- -3'
miRNA:   3'- -UUGgACGCGACGCUGcagaGGACCaa -5'
6362 3' -58.6 NC_001847.1 + 118015 1.02 0.003228
Target:  5'- cAACCUGCGCUGCGACGUCUCCUGGUUc -3'
miRNA:   3'- -UUGGACGCGACGCUGCAGAGGACCAA- -5'
6362 3' -58.6 NC_001847.1 + 71765 0.67 0.646544
Target:  5'- ----cGCGCUGCGGCGgCUCgUGGa- -3'
miRNA:   3'- uuggaCGCGACGCUGCaGAGgACCaa -5'
6362 3' -58.6 NC_001847.1 + 36482 0.68 0.615472
Target:  5'- cACCUGCGCgggcgcGUGGCGgccCUUCUGGg- -3'
miRNA:   3'- uUGGACGCGa-----CGCUGCa--GAGGACCaa -5'
6362 3' -58.6 NC_001847.1 + 51309 0.68 0.594808
Target:  5'- cAGCCcGUGCUGCGGCGgcgCUUCaUGGa- -3'
miRNA:   3'- -UUGGaCGCGACGCUGCa--GAGG-ACCaa -5'
6362 3' -58.6 NC_001847.1 + 115816 0.69 0.523721
Target:  5'- cGCgCUGCGCUGCGGCGggCUCUgcGGa- -3'
miRNA:   3'- uUG-GACGCGACGCUGCa-GAGGa-CCaa -5'
6362 3' -58.6 NC_001847.1 + 123794 0.69 0.513809
Target:  5'- gGGCCUGCGCgGCGGCGgcagCggcaggcgccgUCCUGGc- -3'
miRNA:   3'- -UUGGACGCGaCGCUGCa---G-----------AGGACCaa -5'
6362 3' -58.6 NC_001847.1 + 95658 0.7 0.494222
Target:  5'- gAGCCUGCGCgGCGGgcugGUCUCCaUGGc- -3'
miRNA:   3'- -UUGGACGCGaCGCUg---CAGAGG-ACCaa -5'
6362 3' -58.6 NC_001847.1 + 28200 0.7 0.474982
Target:  5'- cGCCUGCGCgccacgGCGGCGUUcggCCcGGUg -3'
miRNA:   3'- uUGGACGCGa-----CGCUGCAGa--GGaCCAa -5'
6362 3' -58.6 NC_001847.1 + 20863 0.7 0.474982
Target:  5'- -gUCUGCGCUGCGGCGgcgCUCuuuauaCUGGg- -3'
miRNA:   3'- uuGGACGCGACGCUGCa--GAG------GACCaa -5'
6362 3' -58.6 NC_001847.1 + 35865 0.67 0.67751
Target:  5'- cACCUcgacGCGCUGCGGCGgCagCUGGa- -3'
miRNA:   3'- uUGGA----CGCGACGCUGCaGagGACCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.