Results 61 - 80 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 132379 | 0.66 | 0.98928 |
Target: 5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3' miRNA: 3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 132442 | 0.66 | 0.989137 |
Target: 5'- -gGACAUgagggccGGGGCGCCGCgg--GCGg- -3' miRNA: 3'- gaUUGUA-------CCUCGCGGCGaaaaUGCgc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 29629 | 0.66 | 0.989137 |
Target: 5'- -gGACAUgagggccGGGGCGCCGCgg--GCGg- -3' miRNA: 3'- gaUUGUA-------CCUCGCGGCGaaaaUGCgc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 39758 | 0.66 | 0.988992 |
Target: 5'- gCUGACuuUGGAGCGUCGggcauguaugUUGCGCc -3' miRNA: 3'- -GAUUGu-ACCUCGCGGCgaa-------AAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 29998 | 0.67 | 0.987782 |
Target: 5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3' miRNA: 3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 1098 | 0.67 | 0.987782 |
Target: 5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3' miRNA: 3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 32322 | 0.67 | 0.987782 |
Target: 5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3' miRNA: 3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 132811 | 0.67 | 0.987782 |
Target: 5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3' miRNA: 3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 126083 | 0.67 | 0.987782 |
Target: 5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3' miRNA: 3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 23270 | 0.67 | 0.987782 |
Target: 5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3' miRNA: 3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 71862 | 0.67 | 0.987782 |
Target: 5'- -cAGCgGUGGaAGCgGCCGCgagcGCGCGg -3' miRNA: 3'- gaUUG-UACC-UCG-CGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 85845 | 0.67 | 0.987782 |
Target: 5'- --uGCGUcGAGCGCguCGCUg--GCGCGg -3' miRNA: 3'- gauUGUAcCUCGCG--GCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 135135 | 0.67 | 0.987782 |
Target: 5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3' miRNA: 3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 119031 | 0.67 | 0.987464 |
Target: 5'- ----gGUGGGGCGCaCGCUgugggaagcggUACGCc -3' miRNA: 3'- gauugUACCUCGCG-GCGAaa---------AUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 50547 | 0.67 | 0.986129 |
Target: 5'- gCUGGCGUGcGGGUuuugcccgcaGCUGCUg--GCGCGc -3' miRNA: 3'- -GAUUGUAC-CUCG----------CGGCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 78855 | 0.67 | 0.986129 |
Target: 5'- gUAGC-UGGuGUGCuCGCgg-UGCGCGc -3' miRNA: 3'- gAUUGuACCuCGCG-GCGaaaAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 102744 | 0.67 | 0.986129 |
Target: 5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3' miRNA: 3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 67661 | 0.67 | 0.986129 |
Target: 5'- ------aGGGGCGCgGCg---GCGCGg -3' miRNA: 3'- gauuguaCCUCGCGgCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 1911 | 0.67 | 0.986129 |
Target: 5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3' miRNA: 3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 72328 | 0.67 | 0.986129 |
Target: 5'- -gGACGcGGAcGCGCUGCUggUGCuGCa -3' miRNA: 3'- gaUUGUaCCU-CGCGGCGAaaAUG-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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