miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89824 0.66 0.991843
Target:  5'- ---cCGUGGAGCGC-GCggccaacGCGCGa -3'
miRNA:   3'- gauuGUACCUCGCGgCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 86420 0.66 0.991843
Target:  5'- ---uCGUGGAuuuguuggcgGCGCUGCgcg-GCGCGg -3'
miRNA:   3'- gauuGUACCU----------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 105027 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130524 0.66 0.991843
Target:  5'- --uACGUGGucccagAGCGCUGCgacgACGUGg -3'
miRNA:   3'- gauUGUACC------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 64851 0.66 0.991373
Target:  5'- -cAGCGcGGcGCGCCGCgacccgccagGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 33876 0.66 0.99063
Target:  5'- uCUuGCA-GGAgGCGCCGCc---GCGCGu -3'
miRNA:   3'- -GAuUGUaCCU-CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 57685 0.66 0.99063
Target:  5'- -gGugGUGcuGGGCGCCGCgggUGcCGCGc -3'
miRNA:   3'- gaUugUAC--CUCGCGGCGaaaAU-GCGC- -5'
6362 5' -50.3 NC_001847.1 + 67991 0.66 0.99063
Target:  5'- -cGGCuUGGGGCgGCCGgUaUUACGCc -3'
miRNA:   3'- gaUUGuACCUCG-CGGCgAaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 49502 0.66 0.99063
Target:  5'- cCUGAUc---GGCGCCGCUUcgccggGCGCGg -3'
miRNA:   3'- -GAUUGuaccUCGCGGCGAAaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 4563 0.66 0.99024
Target:  5'- -cGGCGUGGAaguggaaguggugcGgGUCGCgg-UGCGCGg -3'
miRNA:   3'- gaUUGUACCU--------------CgCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 77602 0.66 0.990107
Target:  5'- -cGGCAcccguuucUGGcGGCGCCGCUgggcgaggacgGCGCGc -3'
miRNA:   3'- gaUUGU--------ACC-UCGCGGCGAaaa--------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132379 0.66 0.98928
Target:  5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 71573 0.66 0.98928
Target:  5'- -cGGCAgcGAGCGCaC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGUacCUCGCG-GcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29566 0.66 0.98928
Target:  5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 34684 0.66 0.98928
Target:  5'- -cGGCAggaGGAGCGCuggCGCgaggacUUGCGCGc -3'
miRNA:   3'- gaUUGUa--CCUCGCG---GCGaa----AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43120 0.66 0.98928
Target:  5'- aUGACGUGGAGCG--GCUcu--CGCGg -3'
miRNA:   3'- gAUUGUACCUCGCggCGAaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 48077 0.66 0.98928
Target:  5'- -aGGCG-GGGGCGCaCGCc---GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCG-GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53268 0.66 0.98928
Target:  5'- ------cGGGGCGCUGCgcgcccagGCGCGc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa----UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.