miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 89089 0.66 0.993894
Target:  5'- --cACcgGGAGUaCCGCg--UGCGCa -3'
miRNA:   3'- gauUGuaCCUCGcGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 53832 0.66 0.99371
Target:  5'- -gAGCG-GGGGCGCUGaagagccgGCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGGCgaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19214 0.66 0.993616
Target:  5'- -aGACGgcGAGUGCCGCUgcgacagccagcgccUGCGCGa -3'
miRNA:   3'- gaUUGUacCUCGCGGCGAaa-------------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50465 0.66 0.993616
Target:  5'- --cACGU-GAGCGCCGCgcgacagcaagcgGCGCGc -3'
miRNA:   3'- gauUGUAcCUCGCGGCGaaaa---------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 7468 0.66 0.992927
Target:  5'- -----uUGG-GUGCCGUuaUUUUGCGCGu -3'
miRNA:   3'- gauuguACCuCGCGGCG--AAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 110281 0.66 0.992927
Target:  5'- -----uUGG-GUGCCGUuaUUUUGCGCGu -3'
miRNA:   3'- gauuguACCuCGCGGCG--AAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 16842 0.66 0.992927
Target:  5'- -gGGCAUcGGGGCGgCGCUcg-AgGCGa -3'
miRNA:   3'- gaUUGUA-CCUCGCgGCGAaaaUgCGC- -5'
6362 5' -50.3 NC_001847.1 + 65751 0.66 0.992927
Target:  5'- -gAGCGUGGuGGC-CCGCgg--GCGCa -3'
miRNA:   3'- gaUUGUACC-UCGcGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 75923 0.66 0.992927
Target:  5'- -gAGCAcgcGGuGGCGCCGCcg-UGCGCc -3'
miRNA:   3'- gaUUGUa--CC-UCGCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 68905 0.66 0.992927
Target:  5'- -cGGCccGGAGagugcaGCC-CUUUUGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCg-----CGGcGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11837 0.66 0.992508
Target:  5'- uCUGGCGUaaGGccucuGGCGCCGCccugcgggcgGCGCGa -3'
miRNA:   3'- -GAUUGUA--CC-----UCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 89824 0.66 0.991843
Target:  5'- ---cCGUGGAGCGC-GCggccaacGCGCGa -3'
miRNA:   3'- gauuGUACCUCGCGgCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 15462 0.66 0.991843
Target:  5'- -aAGCGUGGcGGCGCacggCGCgcagACGCGc -3'
miRNA:   3'- gaUUGUACC-UCGCG----GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49012 0.66 0.991843
Target:  5'- -aAGCcgGcAGCGCCGCgu---CGCGg -3'
miRNA:   3'- gaUUGuaCcUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130524 0.66 0.991843
Target:  5'- --uACGUGGucccagAGCGCUGCgacgACGUGg -3'
miRNA:   3'- gauUGUACC------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130221 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 105027 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 96349 0.66 0.991843
Target:  5'- gCUGGCGUGcGAcGCGCUGCcggcagggACGCu -3'
miRNA:   3'- -GAUUGUAC-CU-CGCGGCGaaaa----UGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.