miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 13068 0.68 0.966139
Target:  5'- uUGGCGUGacGCGCUGCU---GCGCGa -3'
miRNA:   3'- gAUUGUACcuCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 14944 0.69 0.958957
Target:  5'- --uGCGaGcGGGCGCCGCUc--GCGCGg -3'
miRNA:   3'- gauUGUaC-CUCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 15462 0.66 0.991843
Target:  5'- -aAGCGUGGcGGCGCacggCGCgcagACGCGc -3'
miRNA:   3'- gaUUGUACC-UCGCG----GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 16596 0.72 0.880004
Target:  5'- -cGGCGUGGGGUGCCgGCgaucagACGCu -3'
miRNA:   3'- gaUUGUACCUCGCGG-CGaaaa--UGCGc -5'
6362 5' -50.3 NC_001847.1 + 16842 0.66 0.992927
Target:  5'- -gGGCAUcGGGGCGgCGCUcg-AgGCGa -3'
miRNA:   3'- gaUUGUA-CCUCGCgGCGAaaaUgCGC- -5'
6362 5' -50.3 NC_001847.1 + 17288 0.73 0.803058
Target:  5'- --cGCGUGGAGCGCgGCggguaguacucggcgGCGCGg -3'
miRNA:   3'- gauUGUACCUCGCGgCGaaaa-----------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19214 0.66 0.993616
Target:  5'- -aGACGgcGAGUGCCGCUgcgacagccagcgccUGCGCGa -3'
miRNA:   3'- gaUUGUacCUCGCGGCGAaa-------------AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19325 0.66 0.994751
Target:  5'- ---cCGUGGcuguuaacgcaAGCGCCGCggccgggucUUGCGCGc -3'
miRNA:   3'- gauuGUACC-----------UCGCGGCGaa-------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19624 0.71 0.914065
Target:  5'- -gGGCccGGGGCGCCGgCgucgGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 21202 0.68 0.977755
Target:  5'- -cGGCGUaGGAGaCGCCGCcgcgaccGCGCGc -3'
miRNA:   3'- gaUUGUA-CCUC-GCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 22167 0.74 0.784011
Target:  5'- -cGugGUGGAcacgaucGCGCCGCgaaUGCGCGg -3'
miRNA:   3'- gaUugUACCU-------CGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 23270 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27864 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 28835 0.66 0.993894
Target:  5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3'
miRNA:   3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5'
6362 5' -50.3 NC_001847.1 + 29329 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29379 0.67 0.984308
Target:  5'- -cGGCGgccGGAGCuGCCGC----GCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCG-CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 29566 0.66 0.98928
Target:  5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 29629 0.66 0.989137
Target:  5'- -gGACAUgagggccGGGGCGCCGCgg--GCGg- -3'
miRNA:   3'- gaUUGUA-------CCUCGCGGCGaaaaUGCgc -5'
6362 5' -50.3 NC_001847.1 + 29680 0.69 0.950793
Target:  5'- -cGGCGUGGcgcagcugauGGCGCugauCGCUUggGCGCGa -3'
miRNA:   3'- gaUUGUACC----------UCGCG----GCGAAaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.