miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 552 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 1098 0.67 0.987782
Target:  5'- gUGACucUGGAGaCGCCGCg--UGCcccuGCGa -3'
miRNA:   3'- gAUUGu-ACCUC-GCGGCGaaaAUG----CGC- -5'
6362 5' -50.3 NC_001847.1 + 1911 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3259 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3315 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 3912 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 3949 0.67 0.986129
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCgGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 4563 0.66 0.99024
Target:  5'- -cGGCGUGGAaguggaaguggugcGgGUCGCgg-UGCGCGg -3'
miRNA:   3'- gaUUGUACCU--------------CgCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 5619 0.76 0.671821
Target:  5'- -gGGCGUGG-GCGCCGCggucccGCGCGc -3'
miRNA:   3'- gaUUGUACCuCGCGGCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 7468 0.66 0.992927
Target:  5'- -----uUGG-GUGCCGUuaUUUUGCGCGu -3'
miRNA:   3'- gauuguACCuCGCGGCG--AAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 9065 0.73 0.803993
Target:  5'- -gGACuuuUGGAGCGCagGCUgcUACGCGc -3'
miRNA:   3'- gaUUGu--ACCUCGCGg-CGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 10166 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 10854 0.69 0.962668
Target:  5'- --cGCGUGGccgaGGCGCgGCgg--GCGCGg -3'
miRNA:   3'- gauUGUACC----UCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11179 0.73 0.8312
Target:  5'- -gAGC-UGGGGCuGCCGCUgguccGCGCGg -3'
miRNA:   3'- gaUUGuACCUCG-CGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11347 0.66 0.99467
Target:  5'- -gAGCG-GGAGCacucguacgcgcgGCCGCgcg-GCGCGa -3'
miRNA:   3'- gaUUGUaCCUCG-------------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11837 0.66 0.992508
Target:  5'- uCUGGCGUaaGGccucuGGCGCCGCccugcgggcgGCGCGa -3'
miRNA:   3'- -GAUUGUA--CC-----UCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12082 0.7 0.931383
Target:  5'- ------cGGAGCGCCGCggguccgGCGCc -3'
miRNA:   3'- gauuguaCCUCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 12566 0.74 0.784979
Target:  5'- --cGCAacGGGCGCCGCg--UACGCGg -3'
miRNA:   3'- gauUGUacCUCGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12628 0.73 0.822319
Target:  5'- -cAACAUGGAgGCgGCCGCUgcgGCuGCGg -3'
miRNA:   3'- gaUUGUACCU-CG-CGGCGAaaaUG-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.