miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 106725 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130524 0.66 0.991843
Target:  5'- --uACGUGGucccagAGCGCUGCgacgACGUGg -3'
miRNA:   3'- gauUGUACC------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27408 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 2214 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 64851 0.66 0.991373
Target:  5'- -cAGCGcGGcGCGCCGCgacccgccagGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 67991 0.66 0.99063
Target:  5'- -cGGCuUGGGGCgGCCGgUaUUACGCc -3'
miRNA:   3'- gaUUGuACCUCG-CGGCgAaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 49502 0.66 0.99063
Target:  5'- cCUGAUc---GGCGCCGCUUcgccggGCGCGg -3'
miRNA:   3'- -GAUUGuaccUCGCGGCGAAaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 48077 0.66 0.98928
Target:  5'- -aGGCG-GGGGCGCaCGCc---GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCG-GCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 43120 0.66 0.98928
Target:  5'- aUGACGUGGAGCG--GCUcu--CGCGg -3'
miRNA:   3'- gAUUGUACCUCGCggCGAaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 49012 0.66 0.991843
Target:  5'- -aAGCcgGcAGCGCCGCgu---CGCGg -3'
miRNA:   3'- gaUUGuaCcUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 88359 0.66 0.991843
Target:  5'- -gAACGaGGGGCG-CGCgg--GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCgGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 7468 0.66 0.992927
Target:  5'- -----uUGG-GUGCCGUuaUUUUGCGCGu -3'
miRNA:   3'- gauuguACCuCGCGGCG--AAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 116680 0.66 0.994751
Target:  5'- ----uGUGGguccGGCGCUGCgg--GCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 84123 0.66 0.993894
Target:  5'- --cGCAgccaGAGCGCCGCgaaagcugGCGUGg -3'
miRNA:   3'- gauUGUac--CUCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70124 0.66 0.993894
Target:  5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3'
miRNA:   3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5'
6362 5' -50.3 NC_001847.1 + 28835 0.66 0.993894
Target:  5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3'
miRNA:   3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5'
6362 5' -50.3 NC_001847.1 + 61262 0.66 0.993894
Target:  5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3'
miRNA:   3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 53832 0.66 0.99371
Target:  5'- -gAGCG-GGGGCGCUGaagagccgGCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGGCgaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50465 0.66 0.993616
Target:  5'- --cACGU-GAGCGCCGCgcgacagcaagcgGCGCGc -3'
miRNA:   3'- gauUGUAcCUCGCGGCGaaaa---------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 16842 0.66 0.992927
Target:  5'- -gGGCAUcGGGGCGgCGCUcg-AgGCGa -3'
miRNA:   3'- gaUUGUA-CCUCGCgGCGAaaaUgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.