miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 118049 1.11 0.006846
Target:  5'- gCUAACAUGGAGCGCCGCUUUUACGCGg -3'
miRNA:   3'- -GAUUGUACCUCGCGGCGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 98797 0.77 0.628864
Target:  5'- --cGCGUGGcGCGCCGCggc-GCGCGg -3'
miRNA:   3'- gauUGUACCuCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 5619 0.76 0.671821
Target:  5'- -gGGCGUGG-GCGCCGCggucccGCGCGc -3'
miRNA:   3'- gaUUGUACCuCGCGGCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 134197 0.76 0.671821
Target:  5'- -cAGCGUGGAGCGgCGC----GCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCgGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 67267 0.76 0.682496
Target:  5'- --uACGUGGGGUGCCGCcgUUcccaGCGCGu -3'
miRNA:   3'- gauUGUACCUCGCGGCGaaAA----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65879 0.76 0.693125
Target:  5'- gCUGACGUGGGG-GCCGCccaUGCGCc -3'
miRNA:   3'- -GAUUGUACCUCgCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 120955 0.76 0.693125
Target:  5'- gCUGAUGUGGgcggacccAGCGCCGCguaaGCGCGg -3'
miRNA:   3'- -GAUUGUACC--------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50593 0.75 0.734972
Target:  5'- --uACcUGGAGCGCUGCg---ACGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 134824 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32011 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 46888 0.75 0.745213
Target:  5'- --cGCGUGcGAGCGCCGCUUca--GCGa -3'
miRNA:   3'- gauUGUAC-CUCGCGGCGAAaaugCGC- -5'
6362 5' -50.3 NC_001847.1 + 106762 0.74 0.755346
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 52633 0.74 0.755346
Target:  5'- --cGCGUGcgcGAGCGCCGCgccagACGCGa -3'
miRNA:   3'- gauUGUAC---CUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 63201 0.74 0.765358
Target:  5'- -cGACGUGcGGCGCgGCgccgUUUACGCGu -3'
miRNA:   3'- gaUUGUACcUCGCGgCGa---AAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 22167 0.74 0.784011
Target:  5'- -cGugGUGGAcacgaucGCGCCGCgaaUGCGCGg -3'
miRNA:   3'- gaUugUACCU-------CGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12566 0.74 0.784979
Target:  5'- --cGCAacGGGCGCCGCg--UACGCGg -3'
miRNA:   3'- gauUGUacCUCGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 17288 0.73 0.803058
Target:  5'- --cGCGUGGAGCGCgGCggguaguacucggcgGCGCGg -3'
miRNA:   3'- gauUGUACCUCGCGgCGaaaa-----------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 9065 0.73 0.803993
Target:  5'- -gGACuuuUGGAGCGCagGCUgcUACGCGc -3'
miRNA:   3'- gaUUGu--ACCUCGCGg-CGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12628 0.73 0.822319
Target:  5'- -cAACAUGGAgGCgGCCGCUgcgGCuGCGg -3'
miRNA:   3'- gaUUGUACCU-CG-CGGCGAaaaUG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 11179 0.73 0.8312
Target:  5'- -gAGC-UGGGGCuGCCGCUgguccGCGCGg -3'
miRNA:   3'- gaUUGuACCUCG-CGGCGAaaa--UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.