miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 5619 0.76 0.671821
Target:  5'- -gGGCGUGG-GCGCCGCggucccGCGCGc -3'
miRNA:   3'- gaUUGUACCuCGCGGCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56048 0.71 0.887322
Target:  5'- -cGACGaccccUGGgaGGCGCCGCUgaagccUGCGCGg -3'
miRNA:   3'- gaUUGU-----ACC--UCGCGGCGAaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 33149 0.71 0.901207
Target:  5'- --cGCGUGGcgAGCGCgGCggUUGCGCc -3'
miRNA:   3'- gauUGUACC--UCGCGgCGaaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 106725 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50593 0.75 0.734972
Target:  5'- --uACcUGGAGCGCUGCg---ACGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 52633 0.74 0.755346
Target:  5'- --cGCGUGcgcGAGCGCCGCgccagACGCGa -3'
miRNA:   3'- gauUGUAC---CUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 22167 0.74 0.784011
Target:  5'- -cGugGUGGAcacgaucGCGCCGCgaaUGCGCGg -3'
miRNA:   3'- gaUugUACCU-------CGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 17288 0.73 0.803058
Target:  5'- --cGCGUGGAGCGCgGCggguaguacucggcgGCGCGg -3'
miRNA:   3'- gauUGUACCUCGCGgCGaaaa-----------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11179 0.73 0.8312
Target:  5'- -gAGC-UGGGGCuGCCGCUgguccGCGCGg -3'
miRNA:   3'- gaUUGuACCUCG-CGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 122570 0.72 0.872441
Target:  5'- --uGCGaGG-GCGCCGCg--UACGCGg -3'
miRNA:   3'- gauUGUaCCuCGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87922 0.72 0.85661
Target:  5'- -gGGCGUGGGGCugggcgcgGCCGCgc--ACGCGg -3'
miRNA:   3'- gaUUGUACCUCG--------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 12628 0.73 0.822319
Target:  5'- -cAACAUGGAgGCgGCCGCUgcgGCuGCGg -3'
miRNA:   3'- gaUUGUACCU-CG-CGGCGAaaaUG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 67267 0.76 0.682496
Target:  5'- --uACGUGGGGUGCCGCcgUUcccaGCGCGu -3'
miRNA:   3'- gauUGUACCUCGCGGCGaaAA----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102617 0.72 0.85661
Target:  5'- -cAACAgaccGGGCGCCGCUauaUACGCGc -3'
miRNA:   3'- gaUUGUac--CUCGCGGCGAaa-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65879 0.76 0.693125
Target:  5'- gCUGACGUGGGG-GCCGCccaUGCGCc -3'
miRNA:   3'- -GAUUGUACCUCgCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 9065 0.73 0.803993
Target:  5'- -gGACuuuUGGAGCGCagGCUgcUACGCGc -3'
miRNA:   3'- gaUUGu--ACCUCGCGg-CGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 74175 0.72 0.864641
Target:  5'- -cGGCGUGGGGCccauGCCGCgcg-GCGCc -3'
miRNA:   3'- gaUUGUACCUCG----CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 130677 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 134824 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106762 0.74 0.755346
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.