miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 65234 0.71 0.907766
Target:  5'- uUAACG-GGGGCGgCGCUUUUcCGCc -3'
miRNA:   3'- gAUUGUaCCUCGCgGCGAAAAuGCGc -5'
6362 5' -50.3 NC_001847.1 + 33149 0.71 0.901207
Target:  5'- --cGCGUGGcgAGCGCgGCggUUGCGCc -3'
miRNA:   3'- gauUGUACC--UCGCGgCGaaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 12628 0.73 0.822319
Target:  5'- -cAACAUGGAgGCgGCCGCUgcgGCuGCGg -3'
miRNA:   3'- gaUUGUACCU-CG-CGGCGAaaaUG-CGC- -5'
6362 5' -50.3 NC_001847.1 + 134824 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 39589 0.7 0.936628
Target:  5'- ----gGUGGccccAGCGCUGCUgcgGCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 112979 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 56048 0.71 0.887322
Target:  5'- -cGACGaccccUGGgaGGCGCCGCUgaagccUGCGCGg -3'
miRNA:   3'- gaUUGU-----ACC--UCGCGGCGAaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65879 0.76 0.693125
Target:  5'- gCUGACGUGGGG-GCCGCccaUGCGCc -3'
miRNA:   3'- -GAUUGUACCUCgCGGCGaaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 106072 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 67267 0.76 0.682496
Target:  5'- --uACGUGGGGUGCCGCcgUUcccaGCGCGu -3'
miRNA:   3'- gauUGUACCUCGCGGCGaaAA----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130677 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19624 0.71 0.914065
Target:  5'- -gGGCccGGGGCGCCGgCgucgGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102617 0.72 0.85661
Target:  5'- -cAACAgaccGGGCGCCGCUauaUACGCGc -3'
miRNA:   3'- gaUUGUac--CUCGCGGCGAaa-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11179 0.73 0.8312
Target:  5'- -gAGC-UGGGGCuGCCGCUgguccGCGCGg -3'
miRNA:   3'- gaUUGuACCUCG-CGGCGAaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 22167 0.74 0.784011
Target:  5'- -cGugGUGGAcacgaucGCGCCGCgaaUGCGCGg -3'
miRNA:   3'- gaUugUACCU-------CGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 50593 0.75 0.734972
Target:  5'- --uACcUGGAGCGCUGCg---ACGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 98593 0.69 0.946331
Target:  5'- -----uUGGGGCGCCggcGCUUgggcgGCGCGg -3'
miRNA:   3'- gauuguACCUCGCGG---CGAAaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60828 0.7 0.936628
Target:  5'- aUGGCGcgaGGGGCGcCCGCggcgcUGCGCGg -3'
miRNA:   3'- gAUUGUa--CCUCGC-GGCGaaa--AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 83020 0.7 0.931383
Target:  5'- --cGC-UGGGGCGCCGCcggccCGCGg -3'
miRNA:   3'- gauUGuACCUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 114944 0.7 0.920102
Target:  5'- uUGGCGgggcGGGGCGCCGCcc---CGCGg -3'
miRNA:   3'- gAUUGUa---CCUCGCGGCGaaaauGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.