miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 60480 0.72 0.848354
Target:  5'- ---cCAUGGcGcCGCCGCUUUgUGCGCGc -3'
miRNA:   3'- gauuGUACCuC-GCGGCGAAA-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 87922 0.72 0.85661
Target:  5'- -gGGCGUGGGGCugggcgcgGCCGCgc--ACGCGg -3'
miRNA:   3'- gaUUGUACCUCG--------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102617 0.72 0.85661
Target:  5'- -cAACAgaccGGGCGCCGCUauaUACGCGc -3'
miRNA:   3'- gaUUGUac--CUCGCGGCGAaa-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 74175 0.72 0.864641
Target:  5'- -cGGCGUGGGGCccauGCCGCgcg-GCGCc -3'
miRNA:   3'- gaUUGUACCUCG----CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 89579 0.72 0.864641
Target:  5'- -gGGCGUGGAGCgcgacgccGCCGCggugaACGCGc -3'
miRNA:   3'- gaUUGUACCUCG--------CGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 122570 0.72 0.872441
Target:  5'- --uGCGaGG-GCGCCGCg--UACGCGg -3'
miRNA:   3'- gauUGUaCCuCGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 68901 0.72 0.880004
Target:  5'- -cAGCAUGccGAGCGCCGCcgcgcugaggUUcgGCGCGg -3'
miRNA:   3'- gaUUGUAC--CUCGCGGCG----------AAaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 16596 0.72 0.880004
Target:  5'- -cGGCGUGGGGUGCCgGCgaucagACGCu -3'
miRNA:   3'- gaUUGUACCUCGCGG-CGaaaa--UGCGc -5'
6362 5' -50.3 NC_001847.1 + 56048 0.71 0.887322
Target:  5'- -cGACGaccccUGGgaGGCGCCGCUgaagccUGCGCGg -3'
miRNA:   3'- gaUUGU-----ACC--UCGCGGCGAaa----AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130677 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 27864 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 33149 0.71 0.901207
Target:  5'- --cGCGUGGcgAGCGCgGCggUUGCGCc -3'
miRNA:   3'- gauUGUACC--UCGCGgCGaaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 74472 0.71 0.901207
Target:  5'- -gGACGUGcuGUGCCGCgaggGCGCGg -3'
miRNA:   3'- gaUUGUACcuCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 77702 0.71 0.901207
Target:  5'- -cGGCGUGcGcGCGCgCGCUggUGCGCGc -3'
miRNA:   3'- gaUUGUAC-CuCGCG-GCGAaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 65234 0.71 0.907766
Target:  5'- uUAACG-GGGGCGgCGCUUUUcCGCc -3'
miRNA:   3'- gAUUGUaCCUCGCgGCGAAAAuGCGc -5'
6362 5' -50.3 NC_001847.1 + 92813 0.71 0.911577
Target:  5'- -cGGC-UGGAGCGCCGCUaccuccaaaGCGa -3'
miRNA:   3'- gaUUGuACCUCGCGGCGAaaaug----CGC- -5'
6362 5' -50.3 NC_001847.1 + 43703 0.71 0.914065
Target:  5'- aCUGGCGUGcuuuGCGCgCGCUgc-GCGCGg -3'
miRNA:   3'- -GAUUGUACcu--CGCG-GCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 19624 0.71 0.914065
Target:  5'- -gGGCccGGGGCGCCGgCgucgGCGCGc -3'
miRNA:   3'- gaUUGuaCCUCGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 80139 0.71 0.914065
Target:  5'- --cGCAUGGAcuccaGCGCCGCcaugACGCu -3'
miRNA:   3'- gauUGUACCU-----CGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 95754 0.7 0.91951
Target:  5'- uCUGGCGcggGGGGCggcgcggGCCGCUcugGCGCGg -3'
miRNA:   3'- -GAUUGUa--CCUCG-------CGGCGAaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.