miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 135135 0.67 0.987782
Target:  5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3'
miRNA:   3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 134824 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 134197 0.76 0.671821
Target:  5'- -cAGCGUGGAGCGgCGC----GCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCgGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132811 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 132698 0.68 0.972385
Target:  5'- -cGAUcgGGAGCucGCUGCggcugGCGCGa -3'
miRNA:   3'- gaUUGuaCCUCG--CGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 132442 0.66 0.989137
Target:  5'- -gGACAUgagggccGGGGCGCCGCgg--GCGg- -3'
miRNA:   3'- gaUUGUA-------CCUCGCGGCGaaaaUGCgc -5'
6362 5' -50.3 NC_001847.1 + 132379 0.66 0.98928
Target:  5'- -cGGCG-GGGGCGCCGgCgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCUCGCGGC-GaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 132142 0.69 0.945407
Target:  5'- -cGACgcgGUGGAGCGCgCGCggcuccagcGCGCGg -3'
miRNA:   3'- gaUUG---UACCUCGCG-GCGaaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 131648 0.66 0.993894
Target:  5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3'
miRNA:   3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5'
6362 5' -50.3 NC_001847.1 + 130677 0.71 0.887322
Target:  5'- -gGACGcggGGGGCGCCGagg--ACGCGg -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCgaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130524 0.66 0.991843
Target:  5'- --uACGUGGucccagAGCGCUGCgacgACGUGg -3'
miRNA:   3'- gauUGUACC------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 130221 0.66 0.991843
Target:  5'- ------gGGGGCGCUGUUgccgccgGCGCGg -3'
miRNA:   3'- gauuguaCCUCGCGGCGAaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 128116 0.69 0.958957
Target:  5'- -cGACGUGGcgcuGGCGCUGgCggaUGCGCGg -3'
miRNA:   3'- gaUUGUACC----UCGCGGC-GaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 126847 0.67 0.982312
Target:  5'- cCUGGCcccccggGGAGCccuGCCGCUUUgucuUGCGa -3'
miRNA:   3'- -GAUUGua-----CCUCG---CGGCGAAAau--GCGC- -5'
6362 5' -50.3 NC_001847.1 + 126083 0.67 0.987782
Target:  5'- gCUGcaAUGGAGCGCUGCacggggGgGCGg -3'
miRNA:   3'- -GAUugUACCUCGCGGCGaaaa--UgCGC- -5'
6362 5' -50.3 NC_001847.1 + 122570 0.72 0.872441
Target:  5'- --uGCGaGG-GCGCCGCg--UACGCGg -3'
miRNA:   3'- gauUGUaCCuCGCGGCGaaaAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120955 0.76 0.693125
Target:  5'- gCUGAUGUGGgcggacccAGCGCCGCguaaGCGCGg -3'
miRNA:   3'- -GAUUGUACC--------UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 120837 0.67 0.986129
Target:  5'- -gAGCAgcgGGAGCgggGCCGCg---ACGCc -3'
miRNA:   3'- gaUUGUa--CCUCG---CGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 120679 0.7 0.925874
Target:  5'- -cGGCGuUGGAGCGCaCGCcgagcaGCGCGg -3'
miRNA:   3'- gaUUGU-ACCUCGCG-GCGaaaa--UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 119031 0.67 0.987464
Target:  5'- ----gGUGGGGCGCaCGCUgugggaagcggUACGCc -3'
miRNA:   3'- gauugUACCUCGCG-GCGAaa---------AUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.