miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 29998 0.67 0.987782
Target:  5'- -cGGCG-GGAGcCGCCGCUgcccgccCGCGu -3'
miRNA:   3'- gaUUGUaCCUC-GCGGCGAaaau---GCGC- -5'
6362 5' -50.3 NC_001847.1 + 32011 0.75 0.734972
Target:  5'- -gGGCGUGGAGCGCgaaGCUccggcgggGCGCGg -3'
miRNA:   3'- gaUUGUACCUCGCGg--CGAaaa-----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32271 0.68 0.977755
Target:  5'- --uGCGUGGcucGCGCCGUccgcgugGCGCGg -3'
miRNA:   3'- gauUGUACCu--CGCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32322 0.67 0.987782
Target:  5'- --cGCAgGGGGC-CCGCgcg-GCGCGg -3'
miRNA:   3'- gauUGUaCCUCGcGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32380 0.67 0.982312
Target:  5'- -cGGCGUcGcGGGCGUCGCgccUUGCGUGg -3'
miRNA:   3'- gaUUGUA-C-CUCGCGGCGaa-AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32660 0.68 0.975176
Target:  5'- -cGAgGUGGAcgGCGCCGgCg---GCGCGg -3'
miRNA:   3'- gaUUgUACCU--CGCGGC-GaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 32879 0.68 0.966139
Target:  5'- cCUGGCGcUGGAgggcacggugcGCGCCGC----GCGCGa -3'
miRNA:   3'- -GAUUGU-ACCU-----------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 33149 0.71 0.901207
Target:  5'- --cGCGUGGcgAGCGCgGCggUUGCGCc -3'
miRNA:   3'- gauUGUACC--UCGCGgCGaaAAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 33342 0.66 0.994751
Target:  5'- -cGGCcUGGguGGCGCUGCUgcacgagGCGCa -3'
miRNA:   3'- gaUUGuACC--UCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 33876 0.66 0.99063
Target:  5'- uCUuGCA-GGAgGCGCCGCc---GCGCGu -3'
miRNA:   3'- -GAuUGUaCCU-CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34087 0.66 0.991843
Target:  5'- --cGCGUGGcGGcCGCCGUggcucGCGCGg -3'
miRNA:   3'- gauUGUACC-UC-GCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34279 0.67 0.980131
Target:  5'- -cGGCGgcUGG-GCGCCGCgcu--CGCGg -3'
miRNA:   3'- gaUUGU--ACCuCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34684 0.66 0.98928
Target:  5'- -cGGCAggaGGAGCGCuggCGCgaggacUUGCGCGc -3'
miRNA:   3'- gaUUGUa--CCUCGCG---GCGaa----AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 34764 0.68 0.969375
Target:  5'- gCUGGCGcGGcugcGCGCCGCggccgcgGCGCGc -3'
miRNA:   3'- -GAUUGUaCCu---CGCGGCGaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35918 0.67 0.981026
Target:  5'- --cGCGUGGGagccuuuguggcggcGCGCCGCc---GCGCGg -3'
miRNA:   3'- gauUGUACCU---------------CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 35921 0.68 0.975176
Target:  5'- -cGGCAUGGAccggcggucGCGCgCGCU--UGCGCc -3'
miRNA:   3'- gaUUGUACCU---------CGCG-GCGAaaAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 36094 0.69 0.946331
Target:  5'- gCUGGC--GGAGCGCgGCg---ACGCGc -3'
miRNA:   3'- -GAUUGuaCCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 36793 0.69 0.962668
Target:  5'- -gGACuuUGGGGCguuuuGCCGCUUcgUGCGCc -3'
miRNA:   3'- gaUUGu-ACCUCG-----CGGCGAAa-AUGCGc -5'
6362 5' -50.3 NC_001847.1 + 36977 0.68 0.975176
Target:  5'- -gGAC-UGGGcGCGCCGCg---GCGUGc -3'
miRNA:   3'- gaUUGuACCU-CGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 37503 0.66 0.994751
Target:  5'- -cGACGccuuuuUGGcGCGCCGCcUggACGCa -3'
miRNA:   3'- gaUUGU------ACCuCGCGGCGaAaaUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.