miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 25986 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 3910 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 106723 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 128799 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 14445 0.66 0.895147
Target:  5'- gCGCCGAGcGcGCGgccGCGCUgcucGGCGUg -3'
miRNA:   3'- gGUGGCUC-C-CGCacaUGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 75006 0.66 0.895147
Target:  5'- uCCGCCGGcGGGCGgggGgccagcggGCAgaaGGCGCc -3'
miRNA:   3'- -GGUGGCU-CCCGCa--Ca-------UGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78295 0.66 0.894489
Target:  5'- gCCGCCGGGcgcagacGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- -GGUGGCUC-------CCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 73788 0.66 0.888472
Target:  5'- cUCGCCGgugcGGGGCugccugccgGUGgGCUaGGCGCg -3'
miRNA:   3'- -GGUGGC----UCCCGca-------CAUgUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133289 0.66 0.888472
Target:  5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3'
miRNA:   3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 14223 0.66 0.888472
Target:  5'- cCgGCCGGGGGCGUGgugag--GGCa- -3'
miRNA:   3'- -GgUGGCUCCCGCACaugugaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 30476 0.66 0.888472
Target:  5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3'
miRNA:   3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 120871 0.66 0.888472
Target:  5'- gCCGCgGcGGGaaaGUG-GCGCUUGGCa- -3'
miRNA:   3'- -GGUGgCuCCCg--CACaUGUGAACCGcg -5'
6363 3' -55.9 NC_001847.1 + 44287 0.66 0.888472
Target:  5'- aCACCGGcGGCGcg-GCGC--GGCGCg -3'
miRNA:   3'- gGUGGCUcCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 120693 0.66 0.888472
Target:  5'- aCGCCGAGcagcGCGgccGcGCGCUcGGCGCc -3'
miRNA:   3'- gGUGGCUCc---CGCa--CaUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33524 0.66 0.888472
Target:  5'- gCCGCCGcGGaGGCGccggGCGCg-GGCGCc -3'
miRNA:   3'- -GGUGGC-UC-CCGCaca-UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 53692 0.66 0.888472
Target:  5'- gUCACCGcgaaccAGGGCGagucUGUGgGCcggcggcUGGCGCu -3'
miRNA:   3'- -GGUGGC------UCCCGC----ACAUgUGa------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83316 0.66 0.888472
Target:  5'- gCGCaCGGGGGC------GCUUGGCGCc -3'
miRNA:   3'- gGUG-GCUCCCGcacaugUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 62486 0.66 0.888472
Target:  5'- gUCGCCGGcGGGCGgc--CGCggggUGGCGg -3'
miRNA:   3'- -GGUGGCU-CCCGCacauGUGa---ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 45255 0.66 0.888472
Target:  5'- gCGCCGccGGCGUGaGCGC--GGCGa -3'
miRNA:   3'- gGUGGCucCCGCACaUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 113021 0.66 0.887792
Target:  5'- gCCGCCGggcccAGGGCGcgcccgcUGU-CGCccccGGCGCg -3'
miRNA:   3'- -GGUGGC-----UCCCGC-------ACAuGUGaa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.