miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 77464 0.66 0.901593
Target:  5'- -gGCUG-GGGCGg--GCGCcgGGCGCc -3'
miRNA:   3'- ggUGGCuCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30382 0.66 0.901593
Target:  5'- gCGCUGGugcGGGCGcagacgGCGCU-GGCGCu -3'
miRNA:   3'- gGUGGCU---CCCGCaca---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 47619 0.66 0.901593
Target:  5'- cCCAgCGAaaacaaaaGCGUGUGCucgUGGCGCu -3'
miRNA:   3'- -GGUgGCUcc------CGCACAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95323 0.66 0.901593
Target:  5'- gCGCCGgcAGGGCcgaagGCGCagggGGCGCa -3'
miRNA:   3'- gGUGGC--UCCCGcaca-UGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132826 0.66 0.901593
Target:  5'- uCCGCgcaGcGGGCGUGUcgccauggGCAgccgucuuggacUUUGGCGCg -3'
miRNA:   3'- -GGUGg--CuCCCGCACA--------UGU------------GAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 62135 0.66 0.901593
Target:  5'- gUCugUGAGcGGCGUGcGCA--UGGcCGCg -3'
miRNA:   3'- -GGugGCUC-CCGCACaUGUgaACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 50573 0.66 0.901593
Target:  5'- gUCGCCucugacgacgagGAGGcCGUGUACGa--GGCGCa -3'
miRNA:   3'- -GGUGG------------CUCCcGCACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 49704 0.66 0.901593
Target:  5'- aCUACgGGGGcGCGgcgcccGUGCAagugGGCGCc -3'
miRNA:   3'- -GGUGgCUCC-CGCa-----CAUGUgaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 4073 0.66 0.900959
Target:  5'- gUACCGA-GGCG-GUugcugccGCACUUGGUaGCg -3'
miRNA:   3'- gGUGGCUcCCGCaCA-------UGUGAACCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 105699 0.66 0.895802
Target:  5'- uCgGCCGcGGGCGgcgccacgccccaGCGCUcgcUGGCGCg -3'
miRNA:   3'- -GgUGGCuCCCGCaca----------UGUGA---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 84373 0.66 0.895147
Target:  5'- aCGCCGAgcGGGCuc---CGCgUUGGCGCg -3'
miRNA:   3'- gGUGGCU--CCCGcacauGUG-AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 41804 0.66 0.895147
Target:  5'- gCCGCgcgcuaCGAGGaCGUG-GCGCgggaUUGGCGCg -3'
miRNA:   3'- -GGUG------GCUCCcGCACaUGUG----AACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35558 0.66 0.895147
Target:  5'- gCGCCaAGcuuGGCGUGcGCGCUUuggagcggcgccGGCGCa -3'
miRNA:   3'- gGUGGcUC---CCGCACaUGUGAA------------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 23391 0.66 0.895147
Target:  5'- -gGCUGGguGGGCGgagcuCACUUGGCGg -3'
miRNA:   3'- ggUGGCU--CCCGCacau-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 3910 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 25986 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 99497 0.66 0.895147
Target:  5'- gCCGCCGAGgcGGCGcgGUccaGCGCUggccccaGCGCc -3'
miRNA:   3'- -GGUGGCUC--CCGCa-CA---UGUGAac-----CGCG- -5'
6363 3' -55.9 NC_001847.1 + 14445 0.66 0.895147
Target:  5'- gCGCCGAGcGcGCGgccGCGCUgcucGGCGUg -3'
miRNA:   3'- gGUGGCUC-C-CGCacaUGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 75006 0.66 0.895147
Target:  5'- uCCGCCGGcGGGCGgggGgccagcggGCAgaaGGCGCc -3'
miRNA:   3'- -GGUGGCU-CCCGCa--Ca-------UGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 106723 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.