Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 44439 | 0.66 | 0.907808 |
Target: 5'- gCGCaCGGGGGCGcgGcGCGCggcacGCGCg -3' miRNA: 3'- gGUG-GCUCCCGCa-CaUGUGaac--CGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 30154 | 0.66 | 0.907808 |
Target: 5'- gCGCCGugcgcccuGGGuGCGUG-GCGCUcGGCGg -3' miRNA: 3'- gGUGGC--------UCC-CGCACaUGUGAaCCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 87594 | 0.66 | 0.907808 |
Target: 5'- cUCACCGAGgccGGCGccGUugAgacggcggcUUUGGCGCc -3' miRNA: 3'- -GGUGGCUC---CCGCa-CAugU---------GAACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 101786 | 0.66 | 0.907808 |
Target: 5'- aCUGCUGAGGGUGagGUGCGa--GGgGCc -3' miRNA: 3'- -GGUGGCUCCCGCa-CAUGUgaaCCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 64178 | 0.66 | 0.907808 |
Target: 5'- gCGCgGAcgGGGCGgcgGgcgcgACGCUggcgacccUGGCGCg -3' miRNA: 3'- gGUGgCU--CCCGCa--Ca----UGUGA--------ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 130904 | 0.66 | 0.907808 |
Target: 5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3' miRNA: 3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 89087 | 0.66 | 0.907808 |
Target: 5'- cCCACCGGGaguaccGCGUGcGCACagaaGGCaGCg -3' miRNA: 3'- -GGUGGCUCc-----CGCACaUGUGaa--CCG-CG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 130722 | 0.66 | 0.907808 |
Target: 5'- -gGCCGAGGGgGcGgagGCGCggaGGaCGCg -3' miRNA: 3'- ggUGGCUCCCgCaCa--UGUGaa-CC-GCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 60862 | 0.66 | 0.907808 |
Target: 5'- cCCGCCGAGGccaGCGca-GCGCgc-GCGCg -3' miRNA: 3'- -GGUGGCUCC---CGCacaUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 97624 | 0.66 | 0.907808 |
Target: 5'- aCCGUCGAGGGUGcGUcCAggcGGCGCg -3' miRNA: 3'- -GGUGGCUCCCGCaCAuGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 73329 | 0.66 | 0.907808 |
Target: 5'- gCCGCCGAccuguuGGCaaugGUGUACACc--GCGCg -3' miRNA: 3'- -GGUGGCUc-----CCG----CACAUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 35686 | 0.66 | 0.907808 |
Target: 5'- gCC-CCGAGcGGCGcGcUGCGCaacucccacgcUGGCGCa -3' miRNA: 3'- -GGuGGCUC-CCGCaC-AUGUGa----------ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 33010 | 0.66 | 0.907808 |
Target: 5'- gCgGCCgGGGGGCGcGcgGgGCgaGGCGCg -3' miRNA: 3'- -GgUGG-CUCCCGCaCa-UgUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 21767 | 0.66 | 0.907808 |
Target: 5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3' miRNA: 3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 28091 | 0.66 | 0.907808 |
Target: 5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3' miRNA: 3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 73177 | 0.66 | 0.907808 |
Target: 5'- cCCGCCGcgccGGCGg--GCAC--GGCGCg -3' miRNA: 3'- -GGUGGCuc--CCGCacaUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 124580 | 0.66 | 0.907808 |
Target: 5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3' miRNA: 3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 116571 | 0.66 | 0.907808 |
Target: 5'- gCGCaCGuGGGCaucUGCGCUcugGGCGCa -3' miRNA: 3'- gGUG-GCuCCCGcacAUGUGAa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 50036 | 0.66 | 0.904107 |
Target: 5'- aCCAgcCCGcGGGGCGcgGUggcggccgcggguccGCGCgcGGCGCg -3' miRNA: 3'- -GGU--GGC-UCCCGCa-CA---------------UGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 132826 | 0.66 | 0.901593 |
Target: 5'- uCCGCgcaGcGGGCGUGUcgccauggGCAgccgucuuggacUUUGGCGCg -3' miRNA: 3'- -GGUGg--CuCCCGCACA--------UGU------------GAACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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