Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 83266 | 0.71 | 0.655662 |
Target: 5'- gCGgCGGGGGCGg--GCGCagaGGCGCa -3' miRNA: 3'- gGUgGCUCCCGCacaUGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 132374 | 0.71 | 0.635263 |
Target: 5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3' miRNA: 3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 124920 | 0.72 | 0.574247 |
Target: 5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3' miRNA: 3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 85168 | 0.75 | 0.447699 |
Target: 5'- cUCGCgGAGGGCGUGcacggccUGCGCguacucGGCGCc -3' miRNA: 3'- -GGUGgCUCCCGCAC-------AUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 43573 | 0.7 | 0.726018 |
Target: 5'- uUCGCCGcGGGCGac-GCGCgccccagcgUGGCGCu -3' miRNA: 3'- -GGUGGCuCCCGCacaUGUGa--------ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 122914 | 0.71 | 0.6861 |
Target: 5'- cUCGCCGuucGGGUGUGcGCGCgccGCGCa -3' miRNA: 3'- -GGUGGCu--CCCGCACaUGUGaacCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 66788 | 0.72 | 0.614853 |
Target: 5'- uUCGCCGGcguacgucuGGGCGUcgGUAgGCggGGCGCu -3' miRNA: 3'- -GGUGGCU---------CCCGCA--CAUgUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 88900 | 0.77 | 0.324721 |
Target: 5'- cCCGCCGGGGGCGgcu-CcCUUGcGCGCg -3' miRNA: 3'- -GGUGGCUCCCGCacauGuGAAC-CGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 53411 | 0.71 | 0.675987 |
Target: 5'- gCACCauggggcugGAGGGCGcGUGcCGCUUccaccGGCGCg -3' miRNA: 3'- gGUGG---------CUCCCGCaCAU-GUGAA-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 39244 | 0.78 | 0.303208 |
Target: 5'- aCCACCGucaGGCG-GUGCGCUUGGCu- -3' miRNA: 3'- -GGUGGCuc-CCGCaCAUGUGAACCGcg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 90329 | 0.71 | 0.635263 |
Target: 5'- -uGCCGAcugGGGCGcgGUgccGCGCUcGGCGCu -3' miRNA: 3'- ggUGGCU---CCCGCa-CA---UGUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 77685 | 0.71 | 0.662788 |
Target: 5'- -gGCCGAGcgcuucaaggcGGCGUgcgcgcgcgcgcugGUgcGCGCUUGGCGCg -3' miRNA: 3'- ggUGGCUC-----------CCGCA--------------CA--UGUGAACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 30043 | 0.72 | 0.594496 |
Target: 5'- gCgGCCGuGGGCGacguUGccgGCGCggUGGCGCg -3' miRNA: 3'- -GgUGGCuCCCGC----ACa--UGUGa-ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 85769 | 0.72 | 0.578285 |
Target: 5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3' miRNA: 3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 31210 | 0.73 | 0.554162 |
Target: 5'- cUCGCUGAGGGCGcGgcguggGCGCgcgaaagcggGGCGCg -3' miRNA: 3'- -GGUGGCUCCCGCaCa-----UGUGaa--------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 88808 | 0.75 | 0.457768 |
Target: 5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3' miRNA: 3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 133923 | 0.7 | 0.73582 |
Target: 5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3' miRNA: 3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 52279 | 0.7 | 0.726018 |
Target: 5'- cCCGCgCGccGGCuuuGUGUGCGCgaccgcgGGCGCg -3' miRNA: 3'- -GGUG-GCucCCG---CACAUGUGaa-----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 128903 | 0.7 | 0.716137 |
Target: 5'- -uGCUGGGGGCGgaggGaGCAg-UGGCGCu -3' miRNA: 3'- ggUGGCUCCCGCa---CaUGUgaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 27313 | 0.7 | 0.700182 |
Target: 5'- -uGCCGGcGGGCGUGUcCACggcaaucugccggGGCGUg -3' miRNA: 3'- ggUGGCU-CCCGCACAuGUGaa-----------CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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