miRNA display CGI


Results 21 - 40 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 86737 0.79 0.25125
Target:  5'- cCCGCgGAGGGCGaUGUgucGCGCU-GGCGUg -3'
miRNA:   3'- -GGUGgCUCCCGC-ACA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 122560 0.7 0.705185
Target:  5'- gCCGCacgagugCGAGGGCGccgcGUACGC--GGCGCc -3'
miRNA:   3'- -GGUG-------GCUCCCGCa---CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 80187 0.7 0.702185
Target:  5'- gCCGCCGccucugcGGGCGgGUGCGCcgcgaagcgcagGGCGCu -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAUGUGaa----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30646 0.71 0.635263
Target:  5'- gCCGCCGaAGaGGCG-GUGC---UGGCGCu -3'
miRNA:   3'- -GGUGGC-UC-CCGCaCAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83959 0.7 0.73582
Target:  5'- -gGCCGGGGGCGgagacGUguaccguaccGCGCgaaGGCGCc -3'
miRNA:   3'- ggUGGCUCCCGCa----CA----------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10859 0.7 0.716137
Target:  5'- -gGCCGAGGcGCGgcggGCGCg-GGCGCc -3'
miRNA:   3'- ggUGGCUCC-CGCaca-UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 82329 0.71 0.665838
Target:  5'- aCGcCCGAGGuccaGUGUGCGCggcgccagGGCGCa -3'
miRNA:   3'- gGU-GGCUCCcg--CACAUGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 83266 0.71 0.655662
Target:  5'- gCGgCGGGGGCGg--GCGCagaGGCGCa -3'
miRNA:   3'- gGUgGCUCCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35304 0.74 0.504978
Target:  5'- cCCGCCGAGcGGCGc--GCGCUggaagcgGGCGUg -3'
miRNA:   3'- -GGUGGCUC-CCGCacaUGUGAa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 81046 0.69 0.745531
Target:  5'- aCugCGGGGGCGacGUGgGCgugGGCGg -3'
miRNA:   3'- gGugGCUCCCGCa-CAUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 53258 0.7 0.73582
Target:  5'- gCCGCCucggcGGGGCGcUGcGCGCccaGGCGCg -3'
miRNA:   3'- -GGUGGc----UCCCGC-ACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27313 0.7 0.700182
Target:  5'- -uGCCGGcGGGCGUGUcCACggcaaucugccggGGCGUg -3'
miRNA:   3'- ggUGGCU-CCCGCACAuGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48837 0.72 0.594496
Target:  5'- gCCGCgCGGGGGCGccucGgcCGCgcGGCGCg -3'
miRNA:   3'- -GGUG-GCUCCCGCa---CauGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88808 0.75 0.457768
Target:  5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3'
miRNA:   3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 11317 0.71 0.645468
Target:  5'- cCCGCCGAGgccGGCGg--GCGgcUGGCGCc -3'
miRNA:   3'- -GGUGGCUC---CCGCacaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134946 0.71 0.665838
Target:  5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3'
miRNA:   3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.