miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 86737 0.79 0.25125
Target:  5'- cCCGCgGAGGGCGaUGUgucGCGCU-GGCGUg -3'
miRNA:   3'- -GGUGgCUCCCGC-ACA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 39244 0.78 0.303208
Target:  5'- aCCACCGucaGGCG-GUGCGCUUGGCu- -3'
miRNA:   3'- -GGUGGCuc-CCGCaCAUGUGAACCGcg -5'
6363 3' -55.9 NC_001847.1 + 52025 0.72 0.574247
Target:  5'- gCCGCCGAGGaG-GUGcUACGCgaGGCGg -3'
miRNA:   3'- -GGUGGCUCC-CgCAC-AUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 124920 0.72 0.574247
Target:  5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3'
miRNA:   3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88900 0.77 0.324721
Target:  5'- cCCGCCGGGGGCGgcu-CcCUUGcGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCacauGuGAAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 35304 0.74 0.504978
Target:  5'- cCCGCCGAGcGGCGc--GCGCUggaagcgGGCGUg -3'
miRNA:   3'- -GGUGGCUC-CCGCacaUGUGAa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30043 0.72 0.594496
Target:  5'- gCgGCCGuGGGCGacguUGccgGCGCggUGGCGCg -3'
miRNA:   3'- -GgUGGCuCCCGC----ACa--UGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 90329 0.71 0.635263
Target:  5'- -uGCCGAcugGGGCGcgGUgccGCGCUcGGCGCu -3'
miRNA:   3'- ggUGGCU---CCCGCa-CA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60460 0.66 0.919534
Target:  5'- gCCcCCGucGGGCGcGUcCGCcaUGGCGCc -3'
miRNA:   3'- -GGuGGCu-CCCGCaCAuGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88808 0.75 0.457768
Target:  5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3'
miRNA:   3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85168 0.75 0.447699
Target:  5'- cUCGCgGAGGGCGUGcacggccUGCGCguacucGGCGCc -3'
miRNA:   3'- -GGUGgCUCCCGCAC-------AUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48837 0.72 0.594496
Target:  5'- gCCGCgCGGGGGCGccucGgcCGCgcGGCGCg -3'
miRNA:   3'- -GGUG-GCUCCCGCa---CauGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66788 0.72 0.614853
Target:  5'- uUCGCCGGcguacgucuGGGCGUcgGUAgGCggGGCGCu -3'
miRNA:   3'- -GGUGGCU---------CCCGCA--CAUgUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132374 0.71 0.635263
Target:  5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3'
miRNA:   3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31210 0.73 0.554162
Target:  5'- cUCGCUGAGGGCGcGgcguggGCGCgcgaaagcggGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCaCa-----UGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85769 0.72 0.578285
Target:  5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3'
miRNA:   3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.