miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 60460 0.66 0.919534
Target:  5'- gCCcCCGucGGGCGcGUcCGCcaUGGCGCc -3'
miRNA:   3'- -GGuGGCu-CCCGCaCAuGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 35686 0.66 0.907808
Target:  5'- gCC-CCGAGcGGCGcGcUGCGCaacucccacgcUGGCGCa -3'
miRNA:   3'- -GGuGGCUC-CCGCaC-AUGUGa----------ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33010 0.66 0.907808
Target:  5'- gCgGCCgGGGGGCGcGcgGgGCgaGGCGCg -3'
miRNA:   3'- -GgUGG-CUCCCGCaCa-UgUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 21767 0.66 0.907808
Target:  5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3'
miRNA:   3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 28091 0.66 0.907808
Target:  5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3'
miRNA:   3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5'
6363 3' -55.9 NC_001847.1 + 95323 0.66 0.901593
Target:  5'- gCGCCGgcAGGGCcgaagGCGCagggGGCGCa -3'
miRNA:   3'- gGUGGC--UCCCGcaca-UGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132826 0.66 0.901593
Target:  5'- uCCGCgcaGcGGGCGUGUcgccauggGCAgccgucuuggacUUUGGCGCg -3'
miRNA:   3'- -GGUGg--CuCCCGCACA--------UGU------------GAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 62135 0.66 0.901593
Target:  5'- gUCugUGAGcGGCGUGcGCA--UGGcCGCg -3'
miRNA:   3'- -GGugGCUC-CCGCACaUGUgaACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 50573 0.66 0.901593
Target:  5'- gUCGCCucugacgacgagGAGGcCGUGUACGa--GGCGCa -3'
miRNA:   3'- -GGUGG------------CUCCcGCACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 73329 0.66 0.907808
Target:  5'- gCCGCCGAccuguuGGCaaugGUGUACACc--GCGCg -3'
miRNA:   3'- -GGUGGCUc-----CCG----CACAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 97624 0.66 0.907808
Target:  5'- aCCGUCGAGGGUGcGUcCAggcGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCaCAuGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60862 0.66 0.907808
Target:  5'- cCCGCCGAGGccaGCGca-GCGCgc-GCGCg -3'
miRNA:   3'- -GGUGGCUCC---CGCacaUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33568 0.66 0.919534
Target:  5'- aCGCgGGGGGCGUcugGCGCggcccgGGCucgGCg -3'
miRNA:   3'- gGUGgCUCCCGCAca-UGUGaa----CCG---CG- -5'
6363 3' -55.9 NC_001847.1 + 83141 0.66 0.913789
Target:  5'- gCCGCCGcggcgucGGGCGcGUcCGCgaugcgccGGCGCa -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAuGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 125506 0.66 0.913789
Target:  5'- gCUGCuCGAGcGGCGggccgGCGCggcggcgGGCGCa -3'
miRNA:   3'- -GGUG-GCUC-CCGCaca--UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77929 0.66 0.913789
Target:  5'- -gACCGGcGGGCGgcUGUagcaaACGCcgccgGGCGCg -3'
miRNA:   3'- ggUGGCU-CCCGC--ACA-----UGUGaa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 42117 0.66 0.913789
Target:  5'- gCGCCGGGGGCcgcuuccCGCgUUGGCGa -3'
miRNA:   3'- gGUGGCUCCCGcacau--GUG-AACCGCg -5'
6363 3' -55.9 NC_001847.1 + 33 0.66 0.913789
Target:  5'- aCC-CCGGGGGgGUGUuuuuggggggggGCggaaAUUUcGGCGCg -3'
miRNA:   3'- -GGuGGCUCCCgCACA------------UG----UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 2238 0.66 0.910229
Target:  5'- gCGCUGGgcgcGGGCGUGUgguaguccccgggcgGCACgcGGCGg -3'
miRNA:   3'- gGUGGCU----CCCGCACA---------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 116571 0.66 0.907808
Target:  5'- gCGCaCGuGGGCaucUGCGCUcugGGCGCa -3'
miRNA:   3'- gGUG-GCuCCCGcacAUGUGAa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.