miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 33 0.66 0.913789
Target:  5'- aCC-CCGGGGGgGUGUuuuuggggggggGCggaaAUUUcGGCGCg -3'
miRNA:   3'- -GGuGGCUCCCgCACA------------UG----UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 446 0.69 0.792424
Target:  5'- aCUACCGcGGGCGUccGCucucacuaGCUUcGGCGCc -3'
miRNA:   3'- -GGUGGCuCCCGCAcaUG--------UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 524 0.68 0.801406
Target:  5'- uCCGCgGAGGGCaaGUGcccgACGCggggaacgUGGCGg -3'
miRNA:   3'- -GGUGgCUCCCG--CACa---UGUGa-------ACCGCg -5'
6363 3' -55.9 NC_001847.1 + 1634 0.67 0.881572
Target:  5'- gCACCGcGGcGCGcagGUACACgu-GCGCc -3'
miRNA:   3'- gGUGGCuCC-CGCa--CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 2183 0.69 0.792424
Target:  5'- gCGCCGccuGGGCGgcGUGCg---GGCGCa -3'
miRNA:   3'- gGUGGCu--CCCGCa-CAUGugaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 2238 0.66 0.910229
Target:  5'- gCGCUGGgcgcGGGCGUGUgguaguccccgggcgGCACgcGGCGg -3'
miRNA:   3'- gGUGGCU----CCCGCACA---------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 2303 0.67 0.867116
Target:  5'- gCCGCCGGGcGGCaUGggccccaGCACgcgGGCGg -3'
miRNA:   3'- -GGUGGCUC-CCGcACa------UGUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 3795 0.68 0.827407
Target:  5'- gCUGCaCGAcGGCGUGccgGCACggGGCGUc -3'
miRNA:   3'- -GGUG-GCUcCCGCACa--UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 3910 0.66 0.895147
Target:  5'- gCCAgCGcGGGCGccgGUugcgcgcccGCGCU-GGCGCc -3'
miRNA:   3'- -GGUgGCuCCCGCa--CA---------UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 3981 0.7 0.716137
Target:  5'- gCGCCGGGGGCcggGcGCGCggccccgcggGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGca-CaUGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 4073 0.66 0.900959
Target:  5'- gUACCGA-GGCG-GUugcugccGCACUUGGUaGCg -3'
miRNA:   3'- gGUGGCUcCCGCaCA-------UGUGAACCG-CG- -5'
6363 3' -55.9 NC_001847.1 + 5792 0.67 0.851819
Target:  5'- gCC-CCGGGcccggcaccGCGcuUGCGCUUGGCGCg -3'
miRNA:   3'- -GGuGGCUCc--------CGCacAUGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 8474 0.67 0.859569
Target:  5'- -gGCCGGGGGCG---GCGCUcggccgGGgGCg -3'
miRNA:   3'- ggUGGCUCCCGCacaUGUGAa-----CCgCG- -5'
6363 3' -55.9 NC_001847.1 + 8626 0.69 0.745531
Target:  5'- cCCGCCGGGGGaGcGgcCGCUgcggacucgGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCgCaCauGUGAa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10208 0.66 0.887792
Target:  5'- gCCGCCGggcccAGGGCGcgcccgcUGU-CGCccccGGCGCg -3'
miRNA:   3'- -GGUGGC-----UCCCGC-------ACAuGUGaa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10672 0.67 0.881572
Target:  5'- gUCGCCGGGGGgcucgcccucCG-GUcGCGCccgGGCGCg -3'
miRNA:   3'- -GGUGGCUCCC----------GCaCA-UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 10859 0.7 0.716137
Target:  5'- -gGCCGAGGcGCGgcggGCGCg-GGCGCc -3'
miRNA:   3'- ggUGGCUCC-CGCaca-UGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 11018 0.68 0.813724
Target:  5'- gCCAggCGcAGGGCGUGUucguuucgcuguacuAUGCUUGGcCGCa -3'
miRNA:   3'- -GGUg-GC-UCCCGCACA---------------UGUGAACC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 11317 0.71 0.645468
Target:  5'- cCCGCCGAGgccGGCGg--GCGgcUGGCGCc -3'
miRNA:   3'- -GGUGGCUC---CCGCacaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 13047 0.69 0.771232
Target:  5'- cCCACUGAGgcgcugcucuuuuuGGCGUGacGCGCUgcuGCGCg -3'
miRNA:   3'- -GGUGGCUC--------------CCGCACa-UGUGAac-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.