miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 134946 0.71 0.665838
Target:  5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3'
miRNA:   3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 134638 0.69 0.796034
Target:  5'- -gGCUGGGGGCGggccggcagcagGCGCggaGGCGCg -3'
miRNA:   3'- ggUGGCUCCCGCaca---------UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 134518 0.67 0.881572
Target:  5'- gCgGCCGc-GGCGcauguggugGUACACggGGCGCg -3'
miRNA:   3'- -GgUGGCucCCGCa--------CAUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133923 0.7 0.73582
Target:  5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3'
miRNA:   3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133289 0.66 0.888472
Target:  5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3'
miRNA:   3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 133130 0.67 0.881572
Target:  5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3'
miRNA:   3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132826 0.66 0.901593
Target:  5'- uCCGCgcaGcGGGCGUGUcgccauggGCAgccgucuuggacUUUGGCGCg -3'
miRNA:   3'- -GGUGg--CuCCCGCACA--------UGU------------GAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132374 0.71 0.635263
Target:  5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3'
miRNA:   3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132282 0.67 0.84387
Target:  5'- cCCGCgCGucGGCcUGgGCGC-UGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCGcACaUGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132203 0.7 0.716137
Target:  5'- gCCGCCGcgcuGGaGGCGgccGCGCUggcGGCGCg -3'
miRNA:   3'- -GGUGGC----UC-CCGCacaUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 131700 0.68 0.810236
Target:  5'- gCGCUGuGGGCGcUGccGCACgUGGCGg -3'
miRNA:   3'- gGUGGCuCCCGC-ACa-UGUGaACCGCg -5'
6363 3' -55.9 NC_001847.1 + 131345 0.69 0.745531
Target:  5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3'
miRNA:   3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 130904 0.66 0.907808
Target:  5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3'
miRNA:   3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5'
6363 3' -55.9 NC_001847.1 + 130739 0.68 0.801406
Target:  5'- gCCGCCGucGGCGUcgacGgcgGCGaccgUGGCGCc -3'
miRNA:   3'- -GGUGGCucCCGCA----Ca--UGUga--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 130722 0.66 0.907808
Target:  5'- -gGCCGAGGGgGcGgagGCGCggaGGaCGCg -3'
miRNA:   3'- ggUGGCUCCCgCaCa--UGUGaa-CC-GCG- -5'
6363 3' -55.9 NC_001847.1 + 130621 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 128903 0.7 0.716137
Target:  5'- -uGCUGGGGGCGgaggGaGCAg-UGGCGCu -3'
miRNA:   3'- ggUGGCUCCCGCa---CaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 128799 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 126204 0.66 0.895147
Target:  5'- -gGCUGGguGGGCGgagcuCACUUGGCGg -3'
miRNA:   3'- ggUGGCU--CCCGCacau-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 125506 0.66 0.913789
Target:  5'- gCUGCuCGAGcGGCGggccgGCGCggcggcgGGCGCa -3'
miRNA:   3'- -GGUG-GCUC-CCGCaca--UGUGaa-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.