miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 117702 1.12 0.001753
Target:  5'- gCCACCGAGGGCGUGUACACUUGGCGCc -3'
miRNA:   3'- -GGUGGCUCCCGCACAUGUGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 86737 0.79 0.25125
Target:  5'- cCCGCgGAGGGCGaUGUgucGCGCU-GGCGUg -3'
miRNA:   3'- -GGUGgCUCCCGC-ACA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 39244 0.78 0.303208
Target:  5'- aCCACCGucaGGCG-GUGCGCUUGGCu- -3'
miRNA:   3'- -GGUGGCuc-CCGCaCAUGUGAACCGcg -5'
6363 3' -55.9 NC_001847.1 + 88900 0.77 0.324721
Target:  5'- cCCGCCGGGGGCGgcu-CcCUUGcGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCacauGuGAAC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 116437 0.76 0.387507
Target:  5'- -gGCuCGAGGGCgGUGgGCGC-UGGCGCa -3'
miRNA:   3'- ggUG-GCUCCCG-CACaUGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48452 0.75 0.443163
Target:  5'- gCACCGAGGGCGUGaaggugaggcaaaaGCGCgcGGCGa -3'
miRNA:   3'- gGUGGCUCCCGCACa-------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 85168 0.75 0.447699
Target:  5'- cUCGCgGAGGGCGUGcacggccUGCGCguacucGGCGCc -3'
miRNA:   3'- -GGUGgCUCCCGCAC-------AUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66638 0.75 0.448609
Target:  5'- aCGgCGGGGGCGcguuUGUGgACUgccUGGCGCg -3'
miRNA:   3'- gGUgGCUCCCGC----ACAUgUGA---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95704 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95650 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 95758 0.75 0.448609
Target:  5'- gCGCgGGGGGCGgcgcgGgcCGCUcUGGCGCg -3'
miRNA:   3'- gGUGgCUCCCGCa----CauGUGA-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 100868 0.75 0.457768
Target:  5'- cCCGCCGGGGGuCGgcgGCAgg-GGCGCg -3'
miRNA:   3'- -GGUGGCUCCC-GCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 88808 0.75 0.457768
Target:  5'- gCCGCCGAcgcggcccgcGGGCGgccgUGcUGCGCUcGGCGCu -3'
miRNA:   3'- -GGUGGCU----------CCCGC----AC-AUGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 82490 0.75 0.457768
Target:  5'- gCCGCCGAaGGCGUagGU-CGCgucUGGCGCg -3'
miRNA:   3'- -GGUGGCUcCCGCA--CAuGUGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 41712 0.74 0.49536
Target:  5'- aCACCGAgggccaGGGCGUGUACAgCgccGuGCGCu -3'
miRNA:   3'- gGUGGCU------CCCGCACAUGU-Gaa-C-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 35304 0.74 0.504978
Target:  5'- cCCGCCGAGcGGCGc--GCGCUggaagcgGGCGUg -3'
miRNA:   3'- -GGUGGCUC-CCGCacaUGUGAa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31210 0.73 0.554162
Target:  5'- cUCGCUGAGGGCGcGgcguggGCGCgcgaaagcggGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCaCa-----UGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 46195 0.72 0.574247
Target:  5'- gCGCgGAGaggucGGCGUGUccgucGCGCaUGGCGCa -3'
miRNA:   3'- gGUGgCUC-----CCGCACA-----UGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 22107 0.72 0.574247
Target:  5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3'
miRNA:   3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.