miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 52025 0.72 0.574247
Target:  5'- gCCGCCGAGGaG-GUGcUACGCgaGGCGg -3'
miRNA:   3'- -GGUGGCUCC-CgCAC-AUGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 124920 0.72 0.574247
Target:  5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3'
miRNA:   3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60349 0.72 0.578285
Target:  5'- aCUACCGAGGGCccGUcgaacGUGCACaccuucgccagggGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCG--CA-----CAUGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 85769 0.72 0.578285
Target:  5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3'
miRNA:   3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 110645 0.72 0.584354
Target:  5'- aCGCCcacGGCGUGUGCaACUUGGCcaGCg -3'
miRNA:   3'- gGUGGcucCCGCACAUG-UGAACCG--CG- -5'
6363 3' -55.9 NC_001847.1 + 65731 0.72 0.584354
Target:  5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3'
miRNA:   3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 73215 0.72 0.588407
Target:  5'- gCCGCCGcugacgcggaggaggGGGGCGgcgGCGCg-GGCGCg -3'
miRNA:   3'- -GGUGGC---------------UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30043 0.72 0.594496
Target:  5'- gCgGCCGuGGGCGacguUGccgGCGCggUGGCGCg -3'
miRNA:   3'- -GgUGGCuCCCGC----ACa--UGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48837 0.72 0.594496
Target:  5'- gCCGCgCGGGGGCGccucGgcCGCgcGGCGCg -3'
miRNA:   3'- -GGUG-GCUCCCGCa---CauGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 78666 0.72 0.594496
Target:  5'- gCCugCGucgccGGCGUGcGCACgcgGGCGCu -3'
miRNA:   3'- -GGugGCuc---CCGCACaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 66788 0.72 0.614853
Target:  5'- uUCGCCGGcguacgucuGGGCGUcgGUAgGCggGGCGCu -3'
miRNA:   3'- -GGUGGCU---------CCCGCA--CAUgUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 114236 0.72 0.614853
Target:  5'- gCCGCCGAGuGUGUGUuuugcCGCUgcgggGGCGUc -3'
miRNA:   3'- -GGUGGCUCcCGCACAu----GUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 79604 0.71 0.634242
Target:  5'- gCGCCGGGGGCGuUGUcgccggucgccccGCGgcgGGCGCc -3'
miRNA:   3'- gGUGGCUCCCGC-ACA-------------UGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 29561 0.71 0.635263
Target:  5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3'
miRNA:   3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 67834 0.71 0.635263
Target:  5'- aCGCCGgcGGGGC-UGccgGCGC-UGGCGCg -3'
miRNA:   3'- gGUGGC--UCCCGcACa--UGUGaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30646 0.71 0.635263
Target:  5'- gCCGCCGaAGaGGCG-GUGC---UGGCGCu -3'
miRNA:   3'- -GGUGGC-UC-CCGCaCAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 90329 0.71 0.635263
Target:  5'- -uGCCGAcugGGGCGcgGUgccGCGCUcGGCGCu -3'
miRNA:   3'- ggUGGCU---CCCGCa-CA---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 132374 0.71 0.635263
Target:  5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3'
miRNA:   3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 70694 0.71 0.645468
Target:  5'- gCCGCCGcGGGCGgcgGCGgg-GGCGCc -3'
miRNA:   3'- -GGUGGCuCCCGCacaUGUgaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.