miRNA display CGI


Results 21 - 40 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 14161 0.66 0.913789
Target:  5'- gCCGCU-AGGGCGacgGccGCGCUUacgcGGCGCu -3'
miRNA:   3'- -GGUGGcUCCCGCa--Ca-UGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 14223 0.66 0.888472
Target:  5'- cCgGCCGGGGGCGUGgugag--GGCa- -3'
miRNA:   3'- -GgUGGCUCCCGCACaugugaaCCGcg -5'
6363 3' -55.9 NC_001847.1 + 14445 0.66 0.895147
Target:  5'- gCGCCGAGcGcGCGgccGCGCUgcucGGCGUg -3'
miRNA:   3'- gGUGGCUC-C-CGCacaUGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 19945 0.68 0.798727
Target:  5'- gCCGCgCGAGGGCucgcccuuccacauGUGgguuUUUGGCGCc -3'
miRNA:   3'- -GGUG-GCUCCCG--------------CACauguGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 21767 0.66 0.907808
Target:  5'- gCCGCCGGcgccGGGCccg-GCGCcggccgGGCGCg -3'
miRNA:   3'- -GGUGGCU----CCCGcacaUGUGaa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 22107 0.72 0.574247
Target:  5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3'
miRNA:   3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 22291 0.67 0.881572
Target:  5'- gCCGCCGAGGcCGac-ACGCUgaUGGgGCu -3'
miRNA:   3'- -GGUGGCUCCcGCacaUGUGA--ACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 23080 0.66 0.919534
Target:  5'- gUCGCCGAGGGCGcccucuacGUAgccCGCgc-GCGCc -3'
miRNA:   3'- -GGUGGCUCCCGCa-------CAU---GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 23391 0.66 0.895147
Target:  5'- -gGCUGGguGGGCGgagcuCACUUGGCGg -3'
miRNA:   3'- ggUGGCU--CCCGCacau-GUGAACCGCg -5'
6363 3' -55.9 NC_001847.1 + 24511 0.68 0.801406
Target:  5'- aCGCCGuGGGCGUcgGgGCUcGcGCGCu -3'
miRNA:   3'- gGUGGCuCCCGCAcaUgUGAaC-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 25986 0.66 0.895147
Target:  5'- -gACC-AGGGCGggcgGgcggGCGCgcaGGCGCg -3'
miRNA:   3'- ggUGGcUCCCGCa---Ca---UGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 26090 0.7 0.716137
Target:  5'- -uGCUGGGGGCGgaggGaGCAg-UGGCGCu -3'
miRNA:   3'- ggUGGCUCCCGCa---CaUGUgaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27313 0.7 0.700182
Target:  5'- -uGCCGGcGGGCGUGUcCACggcaaucugccggGGCGUg -3'
miRNA:   3'- ggUGGCU-CCCGCACAuGUGaa-----------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27757 0.66 0.919534
Target:  5'- gCgGCgGGGGGC-UGUGCGg--GGCGUa -3'
miRNA:   3'- -GgUGgCUCCCGcACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27808 0.69 0.768418
Target:  5'- gCCACCGAGGGCGccgaggccgaagACGCggagaucGGCGa -3'
miRNA:   3'- -GGUGGCUCCCGCaca---------UGUGaa-----CCGCg -5'
6363 3' -55.9 NC_001847.1 + 28091 0.66 0.907808
Target:  5'- -gGCgGGGGGCGgcgGUGCcCUcGGgGCc -3'
miRNA:   3'- ggUGgCUCCCGCa--CAUGuGAaCCgCG- -5'
6363 3' -55.9 NC_001847.1 + 28532 0.69 0.745531
Target:  5'- gCCGCCGcccGGcCGcGUGCGCUUcggcGGCGCg -3'
miRNA:   3'- -GGUGGCuc-CC-GCaCAUGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 28887 0.68 0.810236
Target:  5'- gCGCUGuGGGCGcUGccGCACgUGGCGg -3'
miRNA:   3'- gGUGGCuCCCGC-ACa-UGUGaACCGCg -5'
6363 3' -55.9 NC_001847.1 + 29390 0.7 0.716137
Target:  5'- gCCGCCGcgcuGGaGGCGgccGCGCUggcGGCGCg -3'
miRNA:   3'- -GGUGGC----UC-CCGCacaUGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 29469 0.67 0.84387
Target:  5'- cCCGCgCGucGGCcUGgGCGC-UGGCGCg -3'
miRNA:   3'- -GGUG-GCucCCGcACaUGUGaACCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.