miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 29561 0.71 0.635263
Target:  5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3'
miRNA:   3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30043 0.72 0.594496
Target:  5'- gCgGCCGuGGGCGacguUGccgGCGCggUGGCGCg -3'
miRNA:   3'- -GgUGGCuCCCGC----ACa--UGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30154 0.66 0.907808
Target:  5'- gCGCCGugcgcccuGGGuGCGUG-GCGCUcGGCGg -3'
miRNA:   3'- gGUGGC--------UCC-CGCACaUGUGAaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 30237 0.72 0.594496
Target:  5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3'
miRNA:   3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30317 0.67 0.881572
Target:  5'- aCC-CCGAGGaCGUGcGCGuggUGGUGCu -3'
miRNA:   3'- -GGuGGCUCCcGCACaUGUga-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30382 0.66 0.901593
Target:  5'- gCGCUGGugcGGGCGcagacgGCGCU-GGCGCu -3'
miRNA:   3'- gGUGGCU---CCCGCaca---UGUGAaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30476 0.66 0.888472
Target:  5'- gCGCCGAcucgcacgccuGGGCcgg-GCGCUggacgGGCGCg -3'
miRNA:   3'- gGUGGCU-----------CCCGcacaUGUGAa----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 30646 0.71 0.635263
Target:  5'- gCCGCCGaAGaGGCG-GUGC---UGGCGCu -3'
miRNA:   3'- -GGUGGC-UC-CCGCaCAUGugaACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31110 0.7 0.73582
Target:  5'- gCCugCGGGcGGCGc--GCGCUggagcUGGCGCc -3'
miRNA:   3'- -GGugGCUC-CCGCacaUGUGA-----ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31210 0.73 0.554162
Target:  5'- cUCGCUGAGGGCGcGgcguggGCGCgcgaaagcggGGCGCg -3'
miRNA:   3'- -GGUGGCUCCCGCaCa-----UGUGaa--------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 31673 0.68 0.801406
Target:  5'- gCC-CCGAGGaGCuaagggcggccGUGUcuGCGCUguacGGCGCg -3'
miRNA:   3'- -GGuGGCUCC-CG-----------CACA--UGUGAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32133 0.71 0.665838
Target:  5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3'
miRNA:   3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5'
6363 3' -55.9 NC_001847.1 + 32161 0.73 0.554162
Target:  5'- aCGCCGcgacGGCGUGcgcgGCggaGCUUGGCGCg -3'
miRNA:   3'- gGUGGCuc--CCGCACa---UG---UGAACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32682 0.69 0.780532
Target:  5'- uCCGCCGguggcuggaGGGGCGcccgaccugcccgcUGUGCAa--GGCGCc -3'
miRNA:   3'- -GGUGGC---------UCCCGC--------------ACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 32796 0.69 0.745531
Target:  5'- -gGCCGGGGGCGgacgGCGCgUUGGaGCc -3'
miRNA:   3'- ggUGGCUCCCGCaca-UGUG-AACCgCG- -5'
6363 3' -55.9 NC_001847.1 + 32883 0.68 0.827407
Target:  5'- gCGCUgGAGGGCacgGUGCGCgccGCGCg -3'
miRNA:   3'- gGUGG-CUCCCGca-CAUGUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33010 0.66 0.907808
Target:  5'- gCgGCCgGGGGGCGcGcgGgGCgaGGCGCg -3'
miRNA:   3'- -GgUGG-CUCCCGCaCa-UgUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33059 0.66 0.913789
Target:  5'- gCgGCCGAGGcgcuGCGgcaGUACuuuCUgcgcGGCGCg -3'
miRNA:   3'- -GgUGGCUCC----CGCa--CAUGu--GAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33341 0.69 0.764648
Target:  5'- gCgGCCuGGGuGGCGcUGcUGCACgaGGCGCa -3'
miRNA:   3'- -GgUGG-CUC-CCGC-AC-AUGUGaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33524 0.66 0.888472
Target:  5'- gCCGCCGcGGaGGCGccggGCGCg-GGCGCc -3'
miRNA:   3'- -GGUGGC-UC-CCGCaca-UGUGaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.