miRNA display CGI


Results 121 - 140 of 248 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 60739 0.68 0.860378
Target:  5'- cGGGCG-CGGG-CGCGGCGCGGuGG-CGg -3'
miRNA:   3'- -CCCGUgGUUCaGUGUCGCGUU-CCaGC- -5'
6363 5' -55 NC_001847.1 + 101170 0.68 0.860378
Target:  5'- gGGGC-CgGGGUCGgGGCGC--GGUCu -3'
miRNA:   3'- -CCCGuGgUUCAGUgUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 56385 0.68 0.827745
Target:  5'- cGGCGCuCGGGUCGgggaggucggcCGGCGCGGGGa-- -3'
miRNA:   3'- cCCGUG-GUUCAGU-----------GUCGCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 43303 0.68 0.827745
Target:  5'- -cGCACCAGGagGC-GUGCA-GGUCGg -3'
miRNA:   3'- ccCGUGGUUCagUGuCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 15785 0.68 0.860378
Target:  5'- cGGCGgCAAGcgccgCGCGGCGgGAGG-CGg -3'
miRNA:   3'- cCCGUgGUUCa----GUGUCGCgUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 30977 0.68 0.822585
Target:  5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3'
miRNA:   3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 104191 0.68 0.81911
Target:  5'- gGGGCACCGcGcgCGCAGCGCcguuuaugcgAAGGcCu -3'
miRNA:   3'- -CCCGUGGUuCa-GUGUCGCG----------UUCCaGc -5'
6363 5' -55 NC_001847.1 + 116114 0.68 0.860378
Target:  5'- cGGGCcuGCCGgcggGGUCAC-GCGCGaagAGGcCGa -3'
miRNA:   3'- -CCCG--UGGU----UCAGUGuCGCGU---UCCaGC- -5'
6363 5' -55 NC_001847.1 + 61246 0.68 0.836196
Target:  5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3'
miRNA:   3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 571 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 59848 0.68 0.844458
Target:  5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3'
miRNA:   3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 2161 0.68 0.85252
Target:  5'- -aGCACCAGGUCucGCAGCGCccgcgccgccuGGG-CGg -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGu----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 24929 0.68 0.844458
Target:  5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3'
miRNA:   3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 97943 0.68 0.85252
Target:  5'- aGGGCGCUc-GUgACAGCgGCGAGGg-- -3'
miRNA:   3'- -CCCGUGGuuCAgUGUCG-CGUUCCagc -5'
6363 5' -55 NC_001847.1 + 123061 0.68 0.860378
Target:  5'- cGGGCGCCGGaccCGCGGCGCuccgcGGccUCGg -3'
miRNA:   3'- -CCCGUGGUUca-GUGUCGCGuu---CC--AGC- -5'
6363 5' -55 NC_001847.1 + 97946 0.68 0.859601
Target:  5'- cGGCACCGGGcgccUCGCaccgggcucucccGGCGCGAGG-Cu -3'
miRNA:   3'- cCCGUGGUUC----AGUG-------------UCGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 105710 0.68 0.836196
Target:  5'- cGGCGCCAcgccccAGcgcUCGCuGGCGCGcAGGUCa -3'
miRNA:   3'- cCCGUGGU------UC---AGUG-UCGCGU-UCCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.