Results 101 - 120 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 133790 | 0.68 | 0.822585 |
Target: 5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3' miRNA: 3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 41070 | 0.68 | 0.822585 |
Target: 5'- cGGGCAgCAAGUCccgcagggugucgggGgugaugguagcCGGCGCAcuaGGGUCGa -3' miRNA: 3'- -CCCGUgGUUCAG---------------U-----------GUCGCGU---UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 30977 | 0.68 | 0.822585 |
Target: 5'- cGGGCGCaaggacauggccgcgCAGGgCGCGGCGCuGGGGcUCGg -3' miRNA: 3'- -CCCGUG---------------GUUCaGUGUCGCG-UUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 67187 | 0.68 | 0.825173 |
Target: 5'- aGGGCGCgCAGGUagcacaCGCcgugccgagcggcgGGCGCGcGGUCGa -3' miRNA: 3'- -CCCGUG-GUUCA------GUG--------------UCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 56385 | 0.68 | 0.827745 |
Target: 5'- cGGCGCuCGGGUCGgggaggucggcCGGCGCGGGGa-- -3' miRNA: 3'- cCCGUG-GUUCAGU-----------GUCGCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 43303 | 0.68 | 0.827745 |
Target: 5'- -cGCACCAGGagGC-GUGCA-GGUCGg -3' miRNA: 3'- ccCGUGGUUCagUGuCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 19895 | 0.68 | 0.836196 |
Target: 5'- cGGGCGCgAGGUagaAGCGCAcgagGGcGUCGc -3' miRNA: 3'- -CCCGUGgUUCAgugUCGCGU----UC-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 61246 | 0.68 | 0.836196 |
Target: 5'- cGGGCuggGCCA--UCGCuGCGCGGGG-CGc -3' miRNA: 3'- -CCCG---UGGUucAGUGuCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 105710 | 0.68 | 0.836196 |
Target: 5'- cGGCGCCAcgccccAGcgcUCGCuGGCGCGcAGGUCa -3' miRNA: 3'- cCCGUGGU------UC---AGUG-UCGCGU-UCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 16835 | 0.68 | 0.836196 |
Target: 5'- cGGGUAgCC-AGUgGCGGUGCAGGuguaGUCGa -3' miRNA: 3'- -CCCGU-GGuUCAgUGUCGCGUUC----CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 43244 | 0.68 | 0.836196 |
Target: 5'- gGGGCGCgCGGGcggCGCGGCGCccGGGGg-- -3' miRNA: 3'- -CCCGUG-GUUCa--GUGUCGCG--UUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 101084 | 0.68 | 0.836196 |
Target: 5'- cGGGgGCCGGGUCGgCGGgGC-GGG-CGg -3' miRNA: 3'- -CCCgUGGUUCAGU-GUCgCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 33534 | 0.68 | 0.836196 |
Target: 5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3' miRNA: 3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 59848 | 0.68 | 0.844458 |
Target: 5'- gGGGCACCGgccAGgCGCGGuCGCcgAGGGcCGg -3' miRNA: 3'- -CCCGUGGU---UCaGUGUC-GCG--UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 6957 | 0.68 | 0.844458 |
Target: 5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3' miRNA: 3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 24929 | 0.68 | 0.844458 |
Target: 5'- cGGC-CCGcacGUCGCAGUGCcAGGcUCGa -3' miRNA: 3'- cCCGuGGUu--CAGUGUCGCGuUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 68846 | 0.68 | 0.847707 |
Target: 5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3' miRNA: 3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 126505 | 0.68 | 0.851723 |
Target: 5'- uGGGCGcCCGAGUcCGCAGCggccgcucccccgGCGGGGcUUGc -3' miRNA: 3'- -CCCGU-GGUUCA-GUGUCG-------------CGUUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 27815 | 0.68 | 0.85252 |
Target: 5'- aGGGCGCCGAGgccgaagaCGCGGagaucgGCGAGGaCGc -3' miRNA: 3'- -CCCGUGGUUCa-------GUGUCg-----CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82078 | 0.68 | 0.85252 |
Target: 5'- cGGGCucggcgucuggGCCAAG-CGCGGgGCcAGGcUCGg -3' miRNA: 3'- -CCCG-----------UGGUUCaGUGUCgCGuUCC-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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