miRNA display CGI


Results 101 - 120 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 80238 0.66 0.926487
Target:  5'- cGGGCcacguuGCCGGGUCgACGGCgugccgcaGCAGGGcCu -3'
miRNA:   3'- -CCCG------UGGUUCAG-UGUCG--------CGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 79571 0.74 0.490414
Target:  5'- gGGGCGCCGGGcUCGCGGCcucuucggGCGGGGgCGc -3'
miRNA:   3'- -CCCGUGGUUC-AGUGUCG--------CGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 78373 0.66 0.920953
Target:  5'- cGGGCgGgCAA-UCGCGGCGCAuGGcCGa -3'
miRNA:   3'- -CCCG-UgGUUcAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 77666 0.67 0.868024
Target:  5'- cGGGCGCCGAGgUACugcuggccgAGCGCuucAAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCaGUG---------UCGCG---UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 76400 0.69 0.773492
Target:  5'- gGGGCGCCGGGggcCGCGGCG-GGGG-Ca -3'
miRNA:   3'- -CCCGUGGUUCa--GUGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 75383 0.65 0.931777
Target:  5'- uGGGaCACCGucucgcGUCGCcGcCGCGAGG-CGg -3'
miRNA:   3'- -CCC-GUGGUu-----CAGUGuC-GCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 74990 0.68 0.85252
Target:  5'- gGGGCGCCAGGcUCAguccgcCGGCggGCGGGGggccagCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGU------GUCG--CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 72908 0.67 0.868024
Target:  5'- uGGcGCGCCAcgaggcGGUCgGCGGCGUcGGGUUu -3'
miRNA:   3'- -CC-CGUGGU------UCAG-UGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 70511 0.68 0.860378
Target:  5'- cGGGCAUCAAGcaGCGGCuGCuGGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCagUGUCG-CGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 69689 0.69 0.792193
Target:  5'- uGGGCGCgGGG-C-CGGCGCucGGUCc -3'
miRNA:   3'- -CCCGUGgUUCaGuGUCGCGuuCCAGc -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 68835 0.7 0.763943
Target:  5'- aGGGCGCCGcgaagAGcUCG-GGCGCGAGG-CGg -3'
miRNA:   3'- -CCCGUGGU-----UC-AGUgUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68215 0.66 0.902882
Target:  5'- gGGGCGCaCGGGcCGCGGCG--GGGcCGc -3'
miRNA:   3'- -CCCGUG-GUUCaGUGUCGCguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 67187 0.68 0.825173
Target:  5'- aGGGCGCgCAGGUagcacaCGCcgugccgagcggcgGGCGCGcGGUCGa -3'
miRNA:   3'- -CCCGUG-GUUCA------GUG--------------UCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 66467 0.67 0.895712
Target:  5'- cGGGCACgGuagucucAGUCGCc-CGCAGGGgCGg -3'
miRNA:   3'- -CCCGUGgU-------UCAGUGucGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 65495 0.75 0.48077
Target:  5'- -cGUACCGGGUCGCGGCGCGgcuGGGacUCGc -3'
miRNA:   3'- ccCGUGGUUCAGUGUCGCGU---UCC--AGC- -5'
6363 5' -55 NC_001847.1 + 64683 0.75 0.47122
Target:  5'- cGGGCGCCcgcgcguGUCGCAGUGCGucAGGcgCGg -3'
miRNA:   3'- -CCCGUGGuu-----CAGUGUCGCGU--UCCa-GC- -5'
6363 5' -55 NC_001847.1 + 63302 0.74 0.490414
Target:  5'- -aGCACCGGGUCcaGCAGCGCGuGGUUc -3'
miRNA:   3'- ccCGUGGUUCAG--UGUCGCGUuCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.