miRNA display CGI


Results 41 - 60 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 98774 0.66 0.509172
Target:  5'- cGCUgCCCG-GGCCGcGGCGgcGCCgCGu -3'
miRNA:   3'- -CGGgGGGCgCCGGC-UCGUuuCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 126528 0.66 0.509172
Target:  5'- cGCUCCCC-CGGCgGGGCuugcGCUgCGg -3'
miRNA:   3'- -CGGGGGGcGCCGgCUCGuuu-CGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 128772 0.66 0.509172
Target:  5'- cGCCUUCUGCuGCCGcAGCGGcuacGCCCgCGg -3'
miRNA:   3'- -CGGGGGGCGcCGGC-UCGUUu---CGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 6371 0.66 0.509172
Target:  5'- aCCgCCCGCGGCCcccuuuGGCCCUa -3'
miRNA:   3'- cGGgGGGCGCCGGcucguuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 65747 0.66 0.509172
Target:  5'- cGCCgggCCCGCaaaGGCCGccGGCAgcGCCaCCGc -3'
miRNA:   3'- -CGGg--GGGCG---CCGGC--UCGUuuCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 121998 0.66 0.508251
Target:  5'- aGCCCaaCCGcCGGCCGcGGCAGgcggcgcGGCgCCGc -3'
miRNA:   3'- -CGGGg-GGC-GCCGGC-UCGUU-------UCGgGGC- -5'
6364 3' -64.8 NC_001847.1 + 61543 0.66 0.508251
Target:  5'- aGCUCCCCG-GuGCCGGGgGGcugcuugaacugcAGCUCCGu -3'
miRNA:   3'- -CGGGGGGCgC-CGGCUCgUU-------------UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 132320 0.66 0.506411
Target:  5'- aGCCCgCCggcggaggugccggCGCGGCUG-GCGGccgcgcucgcGGCCCUGg -3'
miRNA:   3'- -CGGG-GG--------------GCGCCGGCuCGUU----------UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 29507 0.66 0.506411
Target:  5'- aGCCCgCCggcggaggugccggCGCGGCUG-GCGGccgcgcucgcGGCCCUGg -3'
miRNA:   3'- -CGGG-GG--------------GCGCCGGCuCGUU----------UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 76247 0.66 0.506411
Target:  5'- cGCCCgCgGCGcauuugccgugcuuGCCGcAGCAGuacacuGCCCCGc -3'
miRNA:   3'- -CGGGgGgCGC--------------CGGC-UCGUUu-----CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 9778 0.66 0.50274
Target:  5'- cGCCCCCCggugcuaaugcuguuGCgucuGGCCGgccgcuggcguucAGCGcGGCUCCGa -3'
miRNA:   3'- -CGGGGGG---------------CG----CCGGC-------------UCGUuUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 85570 0.66 0.499994
Target:  5'- gGCgCCgCCGuCGGCCGAGa--GGUUCCGc -3'
miRNA:   3'- -CGgGG-GGC-GCCGGCUCguuUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 124766 0.66 0.499994
Target:  5'- gGCCCCgCCGCGagcggcgacCCGAGCAggGAGUCaUCGa -3'
miRNA:   3'- -CGGGG-GGCGCc--------GGCUCGU--UUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 28779 0.66 0.499994
Target:  5'- cGCCUgCUgcaGCGGCgCGuGCAGGGCUgCCGg -3'
miRNA:   3'- -CGGGgGG---CGCCG-GCuCGUUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 33978 0.66 0.499994
Target:  5'- cGCgCCCCGacccCGGCCccGGCcccGGCCCCa -3'
miRNA:   3'- -CGgGGGGC----GCCGGc-UCGuu-UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 97035 0.66 0.499994
Target:  5'- cGCgUCCUCGUagucuagcgucaGGCUGGGC-AAGUCCCGg -3'
miRNA:   3'- -CG-GGGGGCG------------CCGGCUCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 48710 0.66 0.499994
Target:  5'- cGCUgCCCGC-GCCGcGCAgcGCCgCCa -3'
miRNA:   3'- -CGGgGGGCGcCGGCuCGUuuCGG-GGc -5'
6364 3' -64.8 NC_001847.1 + 19019 0.66 0.499994
Target:  5'- cGCCCCagcgcccggCCGaaaGGCCGAGaagcAGCCCg- -3'
miRNA:   3'- -CGGGG---------GGCg--CCGGCUCguu-UCGGGgc -5'
6364 3' -64.8 NC_001847.1 + 11856 0.66 0.499994
Target:  5'- cGCCgCCCUgcggGCGGCgCGAGCGuauaaAAGCCaCUu -3'
miRNA:   3'- -CGG-GGGG----CGCCG-GCUCGU-----UUCGG-GGc -5'
6364 3' -64.8 NC_001847.1 + 76560 0.66 0.499994
Target:  5'- uGCCCa-CGCaGCCG-GCGGcccGGCCCCc -3'
miRNA:   3'- -CGGGggGCGcCGGCuCGUU---UCGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.