miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 6754 0.66 0.509172
Target:  5'- cGUCUgCggUGCGGCCGGuGCGAGGCgCCa -3'
miRNA:   3'- -CGGGgG--GCGCCGGCU-CGUUUCGgGGc -5'
6364 3' -64.8 NC_001847.1 + 30598 0.66 0.509172
Target:  5'- cGCCgcguagcggCCCCGgGGCCGccGCGcAGCgCCGc -3'
miRNA:   3'- -CGG---------GGGGCgCCGGCu-CGUuUCGgGGC- -5'
6364 3' -64.8 NC_001847.1 + 10418 0.66 0.509172
Target:  5'- uCCCCCgCGCGGuUCGcGCugccGCCCCc -3'
miRNA:   3'- cGGGGG-GCGCC-GGCuCGuuu-CGGGGc -5'
6364 3' -64.8 NC_001847.1 + 104617 0.66 0.509172
Target:  5'- aGCaCgCCCUGCGcGCCGAGCGc-GCUCaCGu -3'
miRNA:   3'- -CG-G-GGGGCGC-CGGCUCGUuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 119595 0.66 0.509172
Target:  5'- uUCCCCCGCGccacCCG-GCGAcgacgaGGCCCgCGa -3'
miRNA:   3'- cGGGGGGCGCc---GGCuCGUU------UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 63669 0.66 0.509172
Target:  5'- uGCUCaugCUCGCGGCCGccauGCccccgGAAGCgCCCGg -3'
miRNA:   3'- -CGGG---GGGCGCCGGCu---CG-----UUUCG-GGGC- -5'
6364 3' -64.8 NC_001847.1 + 102322 0.66 0.509172
Target:  5'- cGCCCCagaUGaCGGCCGcGUccGGCUCCa -3'
miRNA:   3'- -CGGGGg--GC-GCCGGCuCGuuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 78746 0.66 0.509172
Target:  5'- uGUCCCCgCGcCGGCCGAcCu---CCCCGa -3'
miRNA:   3'- -CGGGGG-GC-GCCGGCUcGuuucGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 58272 0.66 0.509172
Target:  5'- cGCCaCCCG-GGCaCG-GCAGGGCgCCCu -3'
miRNA:   3'- -CGGgGGGCgCCG-GCuCGUUUCG-GGGc -5'
6364 3' -64.8 NC_001847.1 + 54889 0.66 0.509172
Target:  5'- aGCCCUgCUGCGGCaCGccgucgacccGGCAAcguGGCCCgCGu -3'
miRNA:   3'- -CGGGG-GGCGCCG-GC----------UCGUU---UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 6371 0.66 0.509172
Target:  5'- aCCgCCCGCGGCCcccuuuGGCCCUa -3'
miRNA:   3'- cGGgGGGCGCCGGcucguuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 128772 0.66 0.509172
Target:  5'- cGCCUUCUGCuGCCGcAGCGGcuacGCCCgCGg -3'
miRNA:   3'- -CGGGGGGCGcCGGC-UCGUUu---CGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 126528 0.66 0.509172
Target:  5'- cGCUCCCC-CGGCgGGGCuugcGCUgCGg -3'
miRNA:   3'- -CGGGGGGcGCCGgCUCGuuu-CGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 67170 0.66 0.509172
Target:  5'- gGCCCCCCGCucucGGC--GGCGAc-CCCCu -3'
miRNA:   3'- -CGGGGGGCG----CCGgcUCGUUucGGGGc -5'
6364 3' -64.8 NC_001847.1 + 57578 0.66 0.509172
Target:  5'- cGgCCCgCGCGGCCGcGgAAAGCgCaCGa -3'
miRNA:   3'- -CgGGGgGCGCCGGCuCgUUUCGgG-GC- -5'
6364 3' -64.8 NC_001847.1 + 1804 0.66 0.509172
Target:  5'- aGCaCgCCCUGCGcGCCGAGCGc-GCUCaCGu -3'
miRNA:   3'- -CG-G-GGGGCGC-CGGCUCGUuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 887 0.66 0.509172
Target:  5'- gGCCCgCgCCGgGGCCGccGC--GGCCgCCGg -3'
miRNA:   3'- -CGGG-G-GGCgCCGGCu-CGuuUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 12458 0.66 0.509172
Target:  5'- aGCUUCCaCGUGGCCGuuguacugcAGCAcaaagacguaAAGCCCgGa -3'
miRNA:   3'- -CGGGGG-GCGCCGGC---------UCGU----------UUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 109184 0.66 0.509172
Target:  5'- aCCgCCCGCGGCCcccuuuGGCCCUa -3'
miRNA:   3'- cGGgGGGCGCCGGcucguuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 115294 0.66 0.509172
Target:  5'- gGCgCCCCCG-GGCgCGGGCcaAGGGCgCUGu -3'
miRNA:   3'- -CG-GGGGGCgCCG-GCUCG--UUUCGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.