miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 2319 0.75 0.136007
Target:  5'- gGCCCCagcaCGCGGgCGGGCAGcggcGGCuCCCGc -3'
miRNA:   3'- -CGGGGg---GCGCCgGCUCGUU----UCG-GGGC- -5'
6364 3' -64.8 NC_001847.1 + 2428 0.87 0.018029
Target:  5'- gGCCCCCCGCGGCgGccGGCAGGGCCgCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGgC--UCGUUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 2481 0.66 0.467591
Target:  5'- gGCgCCCCCGCcGCCGuGUGAAgacgucgcgagggccGCCUCGc -3'
miRNA:   3'- -CG-GGGGGCGcCGGCuCGUUU---------------CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 2544 0.69 0.342894
Target:  5'- gGCgCUCCCGCcGCCGGGCcggggcGGCCCUc -3'
miRNA:   3'- -CG-GGGGGCGcCGGCUCGuu----UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 2589 0.68 0.380666
Target:  5'- cGgCCgCCGCGGCCGcacGCG-AGCCCg- -3'
miRNA:   3'- -CgGGgGGCGCCGGCu--CGUuUCGGGgc -5'
6364 3' -64.8 NC_001847.1 + 2686 0.67 0.412821
Target:  5'- cGUCCUCCG-GGuCCGcccGCGgcGCCCCGg -3'
miRNA:   3'- -CGGGGGGCgCC-GGCu--CGUuuCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 2779 0.71 0.257705
Target:  5'- cGCCCCCgccgGCGGCCuccagggccgcGAGCGcGGCCgCCa -3'
miRNA:   3'- -CGGGGGg---CGCCGG-----------CUCGUuUCGG-GGc -5'
6364 3' -64.8 NC_001847.1 + 2933 0.66 0.49089
Target:  5'- cGCCgCCagCGCGGCCGccuccagcgcGGCGGccGCCUCGg -3'
miRNA:   3'- -CGG-GGg-GCGCCGGC----------UCGUUu-CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 2979 0.67 0.4466
Target:  5'- aGCgCCgCCGgGGCCGGcGCuGGAGCCgCGc -3'
miRNA:   3'- -CGgGG-GGCgCCGGCU-CG-UUUCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 3011 0.72 0.224608
Target:  5'- cGCUCCaCCGCGucgcgggccgcGCCGAGCAGcucggcGGCCCgGa -3'
miRNA:   3'- -CGGGG-GGCGC-----------CGGCUCGUU------UCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 3099 0.76 0.11164
Target:  5'- cGCCCCCCacgauaGCGGCCaGGUAGAGCgCCu -3'
miRNA:   3'- -CGGGGGG------CGCCGGcUCGUUUCGgGGc -5'
6364 3' -64.8 NC_001847.1 + 3117 0.8 0.057881
Target:  5'- gGCCCgCCGCGGCCGAgaGCAccggGAGCCCgGc -3'
miRNA:   3'- -CGGGgGGCGCCGGCU--CGU----UUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 3235 0.67 0.429515
Target:  5'- cGCCgCCCGCGccgugcucGCCGgcGGCAGGGgCgCCGg -3'
miRNA:   3'- -CGGgGGGCGC--------CGGC--UCGUUUCgG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 3367 0.71 0.23522
Target:  5'- cGCCgcaaUCCGCGcGCCGAgccgcGCAAAGCCCUc -3'
miRNA:   3'- -CGGg---GGGCGC-CGGCU-----CGUUUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 3516 0.7 0.301237
Target:  5'- cGCUCCCgGUGaugaaCGAGCuguGGCCCCGg -3'
miRNA:   3'- -CGGGGGgCGCcg---GCUCGuu-UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 3706 0.69 0.32856
Target:  5'- gGCCgcgggCCCCGCGGCCGccgcguAGCGcgcGGCCgCCu -3'
miRNA:   3'- -CGG-----GGGGCGCCGGC------UCGUu--UCGG-GGc -5'
6364 3' -64.8 NC_001847.1 + 3964 0.71 0.254224
Target:  5'- cGUCUCCgGCggcgagggcgccgggGGCCGGGCGcgcGGCCCCGc -3'
miRNA:   3'- -CGGGGGgCG---------------CCGGCUCGUu--UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 4018 0.69 0.314674
Target:  5'- cGCCCCCCGagcagcauacCGcGCCGcGC---GCCCCGa -3'
miRNA:   3'- -CGGGGGGC----------GC-CGGCuCGuuuCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 4029 0.69 0.342894
Target:  5'- cGCCUCUCGCggGGCCGcuuuGGUucuGGUCCCGg -3'
miRNA:   3'- -CGGGGGGCG--CCGGC----UCGuu-UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 4189 0.66 0.509172
Target:  5'- cGCgCgCCCGUgGGCCGcgcgcaggcAGcCAAAGCCCUGc -3'
miRNA:   3'- -CGgG-GGGCG-CCGGC---------UC-GUUUCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.