miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 1 0.69 0.321561
Target:  5'- -CCCUCCGCGccgcGCCGcGCG-GGCCCCc -3'
miRNA:   3'- cGGGGGGCGC----CGGCuCGUuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 117 0.71 0.240682
Target:  5'- cGCCCCgCGCcccGGCCccgcccgcGGGCcucGGGCCCCGg -3'
miRNA:   3'- -CGGGGgGCG---CCGG--------CUCGu--UUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 210 0.73 0.19519
Target:  5'- cGCCCCCgGCGcCCGGGgGcccGAGCCCgGg -3'
miRNA:   3'- -CGGGGGgCGCcGGCUCgU---UUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 254 0.66 0.464056
Target:  5'- cGCCCggcgCCCaGgGGcCCGAGCccgGGGGCCgCCGa -3'
miRNA:   3'- -CGGG----GGG-CgCC-GGCUCG---UUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 371 0.66 0.464056
Target:  5'- gGCCcgCCCCGCGcGCCGcGCGccggaccgcGCUCCGa -3'
miRNA:   3'- -CGG--GGGGCGC-CGGCuCGUuu-------CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 598 0.78 0.082643
Target:  5'- gGCCCUCCGCGGCCGcuccgcAGCGGcgcgcGGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGC------UCGUU-----UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 750 0.68 0.372893
Target:  5'- gGCCCCCCuaGGgCGAGgccGGCCCg- -3'
miRNA:   3'- -CGGGGGGcgCCgGCUCguuUCGGGgc -5'
6364 3' -64.8 NC_001847.1 + 887 0.66 0.509172
Target:  5'- gGCCCgCgCCGgGGCCGccGC--GGCCgCCGg -3'
miRNA:   3'- -CGGG-G-GGCgCCGGCu-CGuuUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 918 0.66 0.464056
Target:  5'- cGCCgCCCGCcggcGCCGGGaagcccGAGCCCgCGc -3'
miRNA:   3'- -CGGgGGGCGc---CGGCUCgu----UUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 967 0.66 0.499994
Target:  5'- cGCCggcaCCCG-GGCCG-GCGGGGCUuCCGc -3'
miRNA:   3'- -CGGg---GGGCgCCGGCuCGUUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 1025 0.75 0.131739
Target:  5'- cGCCgCCCGCGGCgcgccgcagcagcaCGAGCGucucccgcGGGCCCUGg -3'
miRNA:   3'- -CGGgGGGCGCCG--------------GCUCGU--------UUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 1079 0.7 0.310596
Target:  5'- cGUCCCaguccacgccgggcgCCGCGGCCGcgGGCGgcGCCgCCGc -3'
miRNA:   3'- -CGGGG---------------GGCGCCGGC--UCGUuuCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 1185 0.73 0.181351
Target:  5'- gGCCaCCgCCGCGGCCG-GCAGcucgucgggcgccAGCUCCa -3'
miRNA:   3'- -CGG-GG-GGCGCCGGCuCGUU-------------UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 1231 0.71 0.233065
Target:  5'- cGCCgCCCGCaggccagguacaccGGCCGcAGCGgcgcgccGAGCCCCc -3'
miRNA:   3'- -CGGgGGGCG--------------CCGGC-UCGU-------UUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 1349 0.67 0.4466
Target:  5'- cGCCCUgCGCGGCCauguccuuGCGcccgucGAGCgCCGg -3'
miRNA:   3'- -CGGGGgGCGCCGGcu------CGU------UUCGgGGC- -5'
6364 3' -64.8 NC_001847.1 + 1659 0.66 0.49089
Target:  5'- cGCCUgCCCGaCGGCCGGGCc--GUCgCGc -3'
miRNA:   3'- -CGGG-GGGC-GCCGGCUCGuuuCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 1804 0.66 0.509172
Target:  5'- aGCaCgCCCUGCGcGCCGAGCGc-GCUCaCGu -3'
miRNA:   3'- -CG-G-GGGGCGC-CGGCUCGUuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 1921 0.72 0.204123
Target:  5'- aGCCCgCCGCGGCgCG-GCGgccacucGGGCCgCCGg -3'
miRNA:   3'- -CGGGgGGCGCCG-GCuCGU-------UUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 2086 0.67 0.412821
Target:  5'- aGCgCCCCGCGGggcCCGcgcGGCGgcGGGCCgCGa -3'
miRNA:   3'- -CGgGGGGCGCC---GGC---UCGU--UUCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 2260 0.68 0.394126
Target:  5'- aGUCCCCgggcggcaCGCGGCgGAagccgccgucggcgGCGGGGCCgCCGg -3'
miRNA:   3'- -CGGGGG--------GCGCCGgCU--------------CGUUUCGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.