miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 135123 0.69 0.321561
Target:  5'- cCCCCCCGgGGUCGcAG-GGGGCCCgCGc -3'
miRNA:   3'- cGGGGGGCgCCGGC-UCgUUUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 134999 0.74 0.149949
Target:  5'- cGgCCCCC-CGGCCGGGgccCGAGGCCCgCGg -3'
miRNA:   3'- -CgGGGGGcGCCGGCUC---GUUUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 134936 0.72 0.221504
Target:  5'- gGgCCCCCGgGcGCCGGGgGcgggggcgggggcggGGGCCCCGg -3'
miRNA:   3'- -CgGGGGGCgC-CGGCUCgU---------------UUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 134861 0.69 0.314674
Target:  5'- gGCgCCCgCGCGGgcucggcggcccCCGGGCucGGGCCCCu -3'
miRNA:   3'- -CGgGGG-GCGCC------------GGCUCGu-UUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 134744 0.68 0.401376
Target:  5'- gGCCCUCggucucggucggagCGCGGuCCGGcGCGcggcgcgcggggcGGGCCCCGg -3'
miRNA:   3'- -CGGGGG--------------GCGCC-GGCU-CGU-------------UUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 134665 0.67 0.421118
Target:  5'- cGCCCCgCCGCcGCCGcuGCu--GCCgCCGc -3'
miRNA:   3'- -CGGGG-GGCGcCGGCu-CGuuuCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 134612 0.69 0.335671
Target:  5'- cGUUCCCCGC-GUCGGGCAcuuGCCCUc -3'
miRNA:   3'- -CGGGGGGCGcCGGCUCGUuu-CGGGGc -5'
6364 3' -64.8 NC_001847.1 + 134381 0.67 0.43801
Target:  5'- cGCCgCCgGCGG-CGGGCc-GGCCUCGc -3'
miRNA:   3'- -CGGgGGgCGCCgGCUCGuuUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 134226 0.71 0.249642
Target:  5'- gGCUUCCCggcgccggcgggcgGCGGCCG-GCGGccgcggcGGCCCCGg -3'
miRNA:   3'- -CGGGGGG--------------CGCCGGCuCGUU-------UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 134161 0.68 0.365228
Target:  5'- cGCCgCCgGCGGCgGA----AGCCCCGc -3'
miRNA:   3'- -CGGgGGgCGCCGgCUcguuUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 134050 0.73 0.181783
Target:  5'- cGCCgCCCGCGGCCGcGGC---GCCCgGc -3'
miRNA:   3'- -CGGgGGGCGCCGGC-UCGuuuCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 133979 0.66 0.51842
Target:  5'- gGCCUUCugCGCGGCCGcGCugccGGAGCCgCGc -3'
miRNA:   3'- -CGGGGG--GCGCCGGCuCG----UUUCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 133210 0.68 0.404626
Target:  5'- aGCUCUgcgCCGCGcGCCG-GCuAAGCCUCGc -3'
miRNA:   3'- -CGGGG---GGCGC-CGGCuCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 133193 0.66 0.497255
Target:  5'- cGCCCggcgaggacgagcgCCgGCGGcCCGAGU--GGCCgCCGc -3'
miRNA:   3'- -CGGG--------------GGgCGCC-GGCUCGuuUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 133047 0.66 0.481863
Target:  5'- cGCggCCCGCcGCCGcGC-GGGCCCCGc -3'
miRNA:   3'- -CGggGGGCGcCGGCuCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 132968 0.66 0.49089
Target:  5'- cGCCgCCCagGCGGCgCGGGCGcugcGAGaCCUGg -3'
miRNA:   3'- -CGG-GGGg-CGCCG-GCUCGU----UUCgGGGC- -5'
6364 3' -64.8 NC_001847.1 + 132920 0.67 0.421118
Target:  5'- cGCCCagcgCCGCGGCgCuGGCGGccuacugccGCCCCGa -3'
miRNA:   3'- -CGGGg---GGCGCCG-GcUCGUUu--------CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 132827 0.71 0.254224
Target:  5'- uGCCCgCCCGCGuGCUGgggcccaugccgcccGGC--GGCCCCGc -3'
miRNA:   3'- -CGGG-GGGCGC-CGGC---------------UCGuuUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 132786 0.73 0.173304
Target:  5'- cGCCgCCgaCGCGGCCGGGCcggcgcggcgGGAGCCgCCGc -3'
miRNA:   3'- -CGG-GGg-GCGCCGGCUCG----------UUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 132715 0.68 0.404626
Target:  5'- gGCCCUgC-CGGCCGccGCGGGGgCCCCu -3'
miRNA:   3'- -CGGGGgGcGCCGGCu-CGUUUC-GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.