miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 117348 1.09 0.000453
Target:  5'- cGCCCCCCGCGGCCGAGCAAAGCCCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGCUCGUUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 105241 0.87 0.018029
Target:  5'- gGCCCCCCGCGGCgGccGGCAGGGCCgCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGgC--UCGUUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 2428 0.87 0.018029
Target:  5'- gGCCCCCCGCGGCgGccGGCAGGGCCgCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGgC--UCGUUUCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 126534 0.85 0.028086
Target:  5'- uCCCCCCGCccccGGCCGAGCGccGCCCCu -3'
miRNA:   3'- cGGGGGGCG----CCGGCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 23721 0.85 0.028086
Target:  5'- uCCCCCCGCccccGGCCGAGCGccGCCCCu -3'
miRNA:   3'- cGGGGGGCG----CCGGCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 68720 0.84 0.032822
Target:  5'- cGUCCCCCGCGGCCGAGacguaGAAGgaaaCCCCGu -3'
miRNA:   3'- -CGGGGGGCGCCGGCUCg----UUUC----GGGGC- -5'
6364 3' -64.8 NC_001847.1 + 29454 0.82 0.040376
Target:  5'- cGCCgCCCGCGGCCGaAGCGccGCCCgCGg -3'
miRNA:   3'- -CGGgGGGCGCCGGC-UCGUuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 72655 0.82 0.045935
Target:  5'- cGCCaCCCCGCGGCCGcccgccGGCGAccccGGCCCUGc -3'
miRNA:   3'- -CGG-GGGGCGCCGGC------UCGUU----UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 80067 0.81 0.047134
Target:  5'- cGCCCCCCGCGGCCGccAGCAuaaacgcggccAGCUCCu -3'
miRNA:   3'- -CGGGGGGCGCCGGC--UCGUu----------UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 3117 0.8 0.057881
Target:  5'- gGCCCgCCGCGGCCGAgaGCAccggGAGCCCgGc -3'
miRNA:   3'- -CGGGgGGCGCCGGCU--CGU----UUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 105930 0.8 0.057881
Target:  5'- gGCCCgCCGCGGCCGAgaGCAccggGAGCCCgGc -3'
miRNA:   3'- -CGGGgGGCGCCGGCU--CGU----UUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 38134 0.8 0.057881
Target:  5'- uGCCCCCCGCGGCC-AGCGccGCCgacCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGcUCGUuuCGG---GGC- -5'
6364 3' -64.8 NC_001847.1 + 23849 0.79 0.070987
Target:  5'- gGCCCCgCCccCGGCCGAGCGccGCCCCc -3'
miRNA:   3'- -CGGGG-GGc-GCCGGCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 126662 0.79 0.070987
Target:  5'- gGCCCCgCCccCGGCCGAGCGccGCCCCc -3'
miRNA:   3'- -CGGGG-GGc-GCCGGCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 55592 0.79 0.070987
Target:  5'- cGCCCCCCGCGaGCCccAGCccccccGGCCCCGa -3'
miRNA:   3'- -CGGGGGGCGC-CGGc-UCGuu----UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 96176 0.78 0.078369
Target:  5'- aGCCCCgCCGCGGCCGccgccauGGCGcucgcGGCCCCc -3'
miRNA:   3'- -CGGGG-GGCGCCGGC-------UCGUu----UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 112754 0.78 0.082643
Target:  5'- cGCUCgCCGCGGcCCGGGCGcuucuGCCCCGa -3'
miRNA:   3'- -CGGGgGGCGCC-GGCUCGUuu---CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 598 0.78 0.082643
Target:  5'- gGCCCUCCGCGGCCGcuccgcAGCGGcgcgcGGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGC------UCGUU-----UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 103411 0.78 0.082643
Target:  5'- gGCCCUCCGCGGCCGcuccgcAGCGGcgcgcGGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGC------UCGUU-----UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 93151 0.78 0.082643
Target:  5'- cGCCCCCCGCGGgaaaggCGGccGCGAcGCCCCGa -3'
miRNA:   3'- -CGGGGGGCGCCg-----GCU--CGUUuCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.