Results 1 - 20 of 663 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6364 | 3' | -64.8 | NC_001847.1 | + | 105241 | 0.87 | 0.018029 |
Target: 5'- gGCCCCCCGCGGCgGccGGCAGGGCCgCCGc -3' miRNA: 3'- -CGGGGGGCGCCGgC--UCGUUUCGG-GGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 31956 | 0.76 | 0.114447 |
Target: 5'- aGCCUgCCGCGGCgGcGGC-GGGCCCCGu -3' miRNA: 3'- -CGGGgGGCGCCGgC-UCGuUUCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 34290 | 0.76 | 0.117319 |
Target: 5'- cGCCgCgCUCGCGGCCGucAGCGAGGCUUCGg -3' miRNA: 3'- -CGG-G-GGGCGCCGGC--UCGUUUCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 85909 | 0.66 | 0.51842 |
Target: 5'- cGCCaCCCCGCcguuugcGUgGAGCAccaaucagGAcGCCCCGu -3' miRNA: 3'- -CGG-GGGGCGc------CGgCUCGU--------UU-CGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 38134 | 0.8 | 0.057881 |
Target: 5'- uGCCCCCCGCGGCC-AGCGccGCCgacCCGc -3' miRNA: 3'- -CGGGGGGCGCCGGcUCGUuuCGG---GGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 105930 | 0.8 | 0.057881 |
Target: 5'- gGCCCgCCGCGGCCGAgaGCAccggGAGCCCgGc -3' miRNA: 3'- -CGGGgGGCGCCGGCU--CGU----UUCGGGgC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 55592 | 0.79 | 0.070987 |
Target: 5'- cGCCCCCCGCGaGCCccAGCccccccGGCCCCGa -3' miRNA: 3'- -CGGGGGGCGC-CGGc-UCGuu----UCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 96176 | 0.78 | 0.078369 |
Target: 5'- aGCCCCgCCGCGGCCGccgccauGGCGcucgcGGCCCCc -3' miRNA: 3'- -CGGGG-GGCGCCGGC-------UCGUu----UCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 93151 | 0.78 | 0.082643 |
Target: 5'- cGCCCCCCGCGGgaaaggCGGccGCGAcGCCCCGa -3' miRNA: 3'- -CGGGGGGCGCCg-----GCU--CGUUuCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 3099 | 0.76 | 0.11164 |
Target: 5'- cGCCCCCCacgauaGCGGCCaGGUAGAGCgCCu -3' miRNA: 3'- -CGGGGGG------CGCCGGcUCGUUUCGgGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 65445 | 0.77 | 0.093732 |
Target: 5'- cGCgCgCCGCGGaCCGAGCGccGGCCCCGc -3' miRNA: 3'- -CGgGgGGCGCC-GGCUCGUu-UCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 112754 | 0.78 | 0.082643 |
Target: 5'- cGCUCgCCGCGGcCCGGGCGcuucuGCCCCGa -3' miRNA: 3'- -CGGGgGGCGCC-GGCUCGUuu---CGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 126534 | 0.85 | 0.028086 |
Target: 5'- uCCCCCCGCccccGGCCGAGCGccGCCCCu -3' miRNA: 3'- cGGGGGGCG----CCGGCUCGUuuCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 131153 | 0.77 | 0.101047 |
Target: 5'- cGCCCCgCGgGGCCGcGCGcccGGGCCCCc -3' miRNA: 3'- -CGGGGgGCgCCGGCuCGU---UUCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 68720 | 0.84 | 0.032822 |
Target: 5'- cGUCCCCCGCGGCCGAGacguaGAAGgaaaCCCCGu -3' miRNA: 3'- -CGGGGGGCGCCGGCUCg----UUUC----GGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 103411 | 0.78 | 0.082643 |
Target: 5'- gGCCCUCCGCGGCCGcuccgcAGCGGcgcgcGGCCCgCGc -3' miRNA: 3'- -CGGGGGGCGCCGGC------UCGUU-----UCGGG-GC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 84308 | 0.76 | 0.108898 |
Target: 5'- aGCgCCCCC-CGGCgCGGGCAgcGCCCCc -3' miRNA: 3'- -CG-GGGGGcGCCG-GCUCGUuuCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 83520 | 0.76 | 0.114447 |
Target: 5'- uGCCuUCCUGCGGuCCGuGCGccGCCCCGg -3' miRNA: 3'- -CGG-GGGGCGCC-GGCuCGUuuCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 29454 | 0.82 | 0.040376 |
Target: 5'- cGCCgCCCGCGGCCGaAGCGccGCCCgCGg -3' miRNA: 3'- -CGGgGGGCGCCGGC-UCGUuuCGGG-GC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 126662 | 0.79 | 0.070987 |
Target: 5'- gGCCCCgCCccCGGCCGAGCGccGCCCCc -3' miRNA: 3'- -CGGGG-GGc-GCCGGCUCGUuuCGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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