miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 39426 0.76 0.120258
Target:  5'- cGCCCCCCGC-GCCaGAGC--GGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGcCGG-CUCGuuUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 34290 0.76 0.117319
Target:  5'- cGCCgCgCUCGCGGCCGucAGCGAGGCUUCGg -3'
miRNA:   3'- -CGG-G-GGGCGCCGGC--UCGUUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 112754 0.78 0.082643
Target:  5'- cGCUCgCCGCGGcCCGGGCGcuucuGCCCCGa -3'
miRNA:   3'- -CGGGgGGCGCC-GGCUCGUuu---CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 29454 0.82 0.040376
Target:  5'- cGCCgCCCGCGGCCGaAGCGccGCCCgCGg -3'
miRNA:   3'- -CGGgGGGCGCCGGC-UCGUuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 107066 0.75 0.137346
Target:  5'- cGCCCCCCGCcucaguccccgcuucGGCCuugagGGGCGccGCCCCc -3'
miRNA:   3'- -CGGGGGGCG---------------CCGG-----CUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 11416 0.75 0.126033
Target:  5'- cGgCCCCCGUcGCCGAGCGAAGugcugccgugcgaCCCCGc -3'
miRNA:   3'- -CgGGGGGCGcCGGCUCGUUUC-------------GGGGC- -5'
6364 3' -64.8 NC_001847.1 + 31956 0.76 0.114447
Target:  5'- aGCCUgCCGCGGCgGcGGC-GGGCCCCGu -3'
miRNA:   3'- -CGGGgGGCGCCGgC-UCGuUUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 68720 0.84 0.032822
Target:  5'- cGUCCCCCGCGGCCGAGacguaGAAGgaaaCCCCGu -3'
miRNA:   3'- -CGGGGGGCGCCGGCUCg----UUUC----GGGGC- -5'
6364 3' -64.8 NC_001847.1 + 100587 0.75 0.125413
Target:  5'- uGCCgCCgcugcaGCGGCCGAGCAGcccggccaggcucgGGCCCUGg -3'
miRNA:   3'- -CGGgGGg-----CGCCGGCUCGUU--------------UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 126534 0.85 0.028086
Target:  5'- uCCCCCCGCccccGGCCGAGCGccGCCCCu -3'
miRNA:   3'- cGGGGGGCG----CCGGCUCGUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 83520 0.76 0.114447
Target:  5'- uGCCuUCCUGCGGuCCGuGCGccGCCCCGg -3'
miRNA:   3'- -CGG-GGGGCGCC-GGCuCGUuuCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 39453 0.76 0.120258
Target:  5'- cGCCCCCCGC-GCCaGAGC--GGCCCgCGc -3'
miRNA:   3'- -CGGGGGGCGcCGG-CUCGuuUCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 131153 0.77 0.101047
Target:  5'- cGCCCCgCGgGGCCGcGCGcccGGGCCCCc -3'
miRNA:   3'- -CGGGGgGCgCCGGCuCGU---UUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 93151 0.78 0.082643
Target:  5'- cGCCCCCCGCGGgaaaggCGGccGCGAcGCCCCGa -3'
miRNA:   3'- -CGGGGGGCGCCg-----GCU--CGUUuCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 55592 0.79 0.070987
Target:  5'- cGCCCCCCGCGaGCCccAGCccccccGGCCCCGa -3'
miRNA:   3'- -CGGGGGGCGC-CGGc-UCGuu----UCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 38134 0.8 0.057881
Target:  5'- uGCCCCCCGCGGCC-AGCGccGCCgacCCGc -3'
miRNA:   3'- -CGGGGGGCGCCGGcUCGUuuCGG---GGC- -5'
6364 3' -64.8 NC_001847.1 + 15988 0.74 0.159311
Target:  5'- cGCCgCCCCGCGGCggccgcggcgccgaCGAGCucgccaucgacGGCCCCa -3'
miRNA:   3'- -CGG-GGGGCGCCG--------------GCUCGuu---------UCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 39507 0.75 0.139377
Target:  5'- cGCCCCCCGC-GCCaGAGC--GGCCCg- -3'
miRNA:   3'- -CGGGGGGCGcCGG-CUCGuuUCGGGgc -5'
6364 3' -64.8 NC_001847.1 + 76863 0.75 0.136007
Target:  5'- cGCCgUCgCCGCGGCCGAGCAcaugGAGgCCUGc -3'
miRNA:   3'- -CGG-GG-GGCGCCGGCUCGU----UUCgGGGC- -5'
6364 3' -64.8 NC_001847.1 + 102144 0.75 0.129174
Target:  5'- cGCCCCCCGgccgcucCGGCCGcccuGCcc-GCCCCGg -3'
miRNA:   3'- -CGGGGGGC-------GCCGGCu---CGuuuCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.